Gene Caci_4887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4887 
Symbol 
ID8336241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5569383 
End bp5570576 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content73% 
IMG OID644957986 
Product3-oxoadipate enol-lactonase 
Protein accessionYP_003115588 
Protein GI256394024 
COG category[S] Function unknown 
COG ID[COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit 
TIGRFAM ID[TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR02425] 4-carboxymuconolactone decarboxylase
[TIGR02427] 3-oxoadipate enol-lactonase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.307912 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTG TGCCGCACTT CGTGATCGAG GGTCCGTCAG ACGCGCCGCC GCTGCTGTTG 
GCGCCGTCCC TGGGAACCTC GCTGGCCGTA TGGGACGGGC ACGTCAAAGC CCTGGCCCGA
GACCACCGGG TGATCCGCTG GGACCTGCCG GGACACGGCG GCTCCGCGGC CACCCTCGTC
GGCGAGCGGG CGACCGTCGC CGAACTGGCC GACCTGGTCC TGGCCCTGGC CGACCACCTG
GGGTTGGAGC GCTTCGCCTA CGCGGGAATC TCCATCGGCG GAGCGGTGGG CGCCCATCTT
GCCGTCCGCC ATCCCGACCG GATCACCTCC CTGGCACTGG TCTGTTCCTC CGCTCACTTC
GGCGAGCCGC AGGCCTGGCT TGAGCGTGCC GCGCGGGTCC GTCGCGAAGG CACGGAATTC
CTGGCCGCAT CCGCGCCGGC CCGCTGGTTC ACGTCGGACT TCCCCGGCGG CGAGGCCCTG
GAGAAGCTGA TCTCCGACCA GCGTGCCGCC GACCCGGTCG CCTATGCCGC GTGCTGCGAA
GCCCTTGCCG ACTGCGACCT TCGCGGCGAG CTGGACCGGA TCACCGCGCC CACGCTCGTC
ATCGCCGGAC GCGAGGACAC CGCCACCCCG CCGCCGCACT CGCGGGAGCT GGCCGACGGC
ATCGCCGGAG CGGGACTTCT CGAGATCCCG GGTGCGGGCC ATCTCGCGCC GGTCGAACGC
CCGCGGCCCG TCCTGGACGC CCTGCGCGCA CATTTCGGCG CCGCGCCGTC GGATGACGCC
GAGCGTCACG CGGCGGGCAC CGCCATGCGC CGGGCCGTCC TCGGCGACGC CCACGTCGAC
CGCGCGCTCG CCGCCGCCAC GCCGCTCACC GCCGGTTTCC AGGACTTCAT CACCCGCTAC
GCCTGGGGCG AGATCTGGAC CCGCCCCGGC CTGGACCGCC GCACCCGCAG CTGCGTCACT
CTCACCGCGC TGGTGGCCGG GGGTCACCAC GAGGAGCTCG CGCTGCACGT CCGCGCCGCC
GTCCGCAACG GCCTGACTCC CGAGGAGATC GGCGAGGTGC TGCTGCAGAC AGCCGTCTAC
TGCGGCGTCC CGGCCGCCAA CGCCGCGTTC GCCATCGCCC GCAGAGTCCT CGACGAGGCC
ACCAGCGACG AGACCACCGC CGACGAGACC ACCGACCACA AGGACGACCA CTGA
 
Protein sequence
MSLVPHFVIE GPSDAPPLLL APSLGTSLAV WDGHVKALAR DHRVIRWDLP GHGGSAATLV 
GERATVAELA DLVLALADHL GLERFAYAGI SIGGAVGAHL AVRHPDRITS LALVCSSAHF
GEPQAWLERA ARVRREGTEF LAASAPARWF TSDFPGGEAL EKLISDQRAA DPVAYAACCE
ALADCDLRGE LDRITAPTLV IAGREDTATP PPHSRELADG IAGAGLLEIP GAGHLAPVER
PRPVLDALRA HFGAAPSDDA ERHAAGTAMR RAVLGDAHVD RALAAATPLT AGFQDFITRY
AWGEIWTRPG LDRRTRSCVT LTALVAGGHH EELALHVRAA VRNGLTPEEI GEVLLQTAVY
CGVPAANAAF AIARRVLDEA TSDETTADET TDHKDDH