Gene Caci_4868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4868 
Symbol 
ID8336222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5536812 
End bp5537765 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content70% 
IMG OID644957967 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003115569 
Protein GI256394005 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00194851 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGAATG ACAGTTTCAG AGGCAAGACC GCCCTCGTCA CCGGCGGGTC GCGCGGACTG 
GGGCTGTTGA TCGCCCAAGA ACTCGGCGCT CGCGGCTGTC AGGTGATGAT CTGCGCCCGC
GACAGCGGTG AACTGCAGGA GGCCGAACGG CTTCTGCGGG CCCGAGGCGT CGAGGCGGCC
AGCACGGTGT GCGACATCAG GGATCCGGAC GCCGGCCAGA ATCTCCTCGA CGCGGTCGAG
AAGCGGTTCG GACAGCTGGA CATCGTGGTG AACAACGCCG GAATCATCCA GGTGGGCCCG
ATGGAGGCGC TGACCGAGCG GGACTTCGAG AACGCCTGGC AGACGATGTT CGCCGGACCG
CTGCGCCTCA TCTCGGCCGT GCTGCCCGGC ATGCGGGAGC GCCACAGCGG CACCATCGTC
AACATCGCCT CCATCGGCGG GCGCATCCCC GTCCCGCACC TGCTGCCCTA CGTCGCCGCG
AAGCACGCGC TGGCCGGGTT CTCCAGCGGT CTGCGAGCCG AACTCGCCGC GGACGGCGTC
AGCGTCACCA CCGTCGTCCC CGGACTGATG CGCACGGGTT CACACCGTGC CGCCAGGTTC
TCCGGTCAGA GCCGCCGCGA ATACGCGTGG TTCGCCACCG CCGCGTCGCT GCCGCTGCTG
TCCGGCAGCG CCGACCGGGC AGCCCGCGCG ATCGTCCGCG CCGCCGAACA CCGGCGGCCG
GAGTTGGTGT TCACCCCGGC GGCGAAGCTG GCGTGCCGGG CTTATGGGCT GGCTCCCGCC
ACGACCACAC GTCTGCTCGG CGTCGCAGCC CGGCTGCTGC CGAGTGCGAC CTCGACTCCG
GAGCACGACG TGCCCGGCGT CCAGAACACC CGCCAGCAGG GATCTTTTCT GGCCGGTATG
ACAGTGCTCG GCGAGCGTGC GGCACAGCGC AACAACGAAC CCGGCAGCGC CTGA
 
Protein sequence
MGNDSFRGKT ALVTGGSRGL GLLIAQELGA RGCQVMICAR DSGELQEAER LLRARGVEAA 
STVCDIRDPD AGQNLLDAVE KRFGQLDIVV NNAGIIQVGP MEALTERDFE NAWQTMFAGP
LRLISAVLPG MRERHSGTIV NIASIGGRIP VPHLLPYVAA KHALAGFSSG LRAELAADGV
SVTTVVPGLM RTGSHRAARF SGQSRREYAW FATAASLPLL SGSADRAARA IVRAAEHRRP
ELVFTPAAKL ACRAYGLAPA TTTRLLGVAA RLLPSATSTP EHDVPGVQNT RQQGSFLAGM
TVLGERAAQR NNEPGSA