| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4604 |
|---|
| Symbol | |
|---|
| ID | 8335958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5239623 |
|---|
| End bp | 5240618 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644957705 |
|---|
| Product | Pirin domain protein |
|---|
| Protein accession | YP_003115307 |
|---|
| Protein GI | 256393743 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1741] Pirin-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0130352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0000248585 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCTGCTG TGACTGTAGA GAACCCGCTG GCGCTGCCCC GTATCGCCGC TGTCGCGCCG
GATGCGACGC CGCGGCCGGT GCTGGCGGTG GCGACCGCGC CGAGCGGTTT CGAGGGGGAG
GGTTTCCCGG TGCACCGGGC GTTCGCCGGG ATCCGGTCGG AGTATCTGGA TCCGTTCATC
ATGATGGATC AGATGGGCGA GGTGGAGTAC GCCGCCGGGG AGCCGAAGGG CACGCCGTGG
CATCCGCACC GGGGTTTTGA GACCGTCACG TACATCATCG ACGGCACGTT CGTGCACCAG
GACAGCCATG GCGGCGGCGG TGTCATCACC GACGGCGACA CGCAGTGGAT GACGGCTGGT
TCGGGTCTGC TGCACATCGA GACTCCGCCG GAGAAGCTGG TGCAGAGCGG CGGGCTGTTC
CACGGCATCC AGCTGTGGGT GAACCTGCCG GCGGCGAAGA AGTGGTCGCC GCCGCGCTAC
CAGGACATCC GCAGCGGCCA GGTGGGTCTG GCTTCCTCGC AGGACGGTGG CGCGCTGGTG
CGGGTCATCG CCGGCGGTAT CGACGGGGTG CAGGGCCCGG GCAGCACGCA CACGCCGATC
ACGTTGGCGC ACCTGTCGAT CACGCCGGGC GCCCGGGTGG AGCTGCCGTG GCGCAAGGAC
TTCAACGCGC TGGTGTATGT GCTCAACGGC CGCGGCACGG TCGGTGACCA GAGTCGTCCG
GTGAAGTCGG CGCAGGCCGC GGTGCTGGGC GCGGGCGATT CGATCGTGAT CGCCGCCGAT
CAGCAGCAGG AGGGGCGCCA CCCCACGATG GACGTGATCG TCCTGGGCGG TGAGCCGATC
CGGGAGCCGG TGGTGCATTA CGGCCCGTTC GTGATGAACA CCGAGGATGA GATCCGTCAG
GCGCTGCTGG ACTTCCGTTC CGGGAAGATG GGTGTGGAGC CCACGGAGGC GATCCCGCAC
ATCCAGCCTG GTGACACGCC GCCTCCGGCG GTCTAG
|
|---|
| Protein sequence | MPAVTVENPL ALPRIAAVAP DATPRPVLAV ATAPSGFEGE GFPVHRAFAG IRSEYLDPFI
MMDQMGEVEY AAGEPKGTPW HPHRGFETVT YIIDGTFVHQ DSHGGGGVIT DGDTQWMTAG
SGLLHIETPP EKLVQSGGLF HGIQLWVNLP AAKKWSPPRY QDIRSGQVGL ASSQDGGALV
RVIAGGIDGV QGPGSTHTPI TLAHLSITPG ARVELPWRKD FNALVYVLNG RGTVGDQSRP
VKSAQAAVLG AGDSIVIAAD QQQEGRHPTM DVIVLGGEPI REPVVHYGPF VMNTEDEIRQ
ALLDFRSGKM GVEPTEAIPH IQPGDTPPPA V
|
|---|
| |