| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4425 |
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| Symbol | |
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| ID | 8335779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 5026075 |
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| End bp | 5028441 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644957528 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_003115130 |
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| Protein GI | 256393566 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0371338 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.193177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTCTA CCAATGGTGC TTCTTCGCTT GTGGATCCGC GTCGATGGAA GGCGCTGGCT
TTTGTTGGGC TCGCGCAGCT CATGGTGGTG CTTGATGGCA CCGTGGTGAA CATCGCGCTG
CCTTCGGCGC AGCGTGATCT GGGTTTCTCT GATGCGGATC GGCAGTGGGT GGTCACTGCG
TACGCGTTGC CGTTCGGTGC CTTGCTGCTG TTCGGGGGGC GGTTGGCGGA TCGGTTGGGG
CGAAAGCGGA CGTTCCAGAT CGGGGTCATC GGGTTCGCTT TGGCCTCGGC GCTGGGTGGT
GCTTCTGCGG ACACTGCGAT GCTGCTCGGT GCGCGGGCTT TGCAGGGGTG CTTCGGGGCG
ATGCTGGCGC CGTCGGCGTT GTCGCTGGTG ACTGTGATGT TCACTGCGCC TGCCGAGCGG
GCTAAGGCGT TCGGGATCTG GGGGTCGATC GCCGGGGGTG GTGCGGCGGT CGGGTTGATG
CTCGGCGGGT TGCTGACGCA GTATCTGAGC TGGCGCTGGA CGATGTTCGT CAACGTCGTG
TTCGCCGTCA TCGCGTTCTC CGGCGCGGCG ATCACGGTCC GGGAGCCGGC GCGGCGCCAC
GATCATGGGC GCCTGGACTT CCTCGGCATC TTCCTGGTGA CCGGTGGGCT CGGCTGTCTC
GTCTACGGTC TGTCGCGCGC CGAGTCCGAC GGCTGGAACG CGCGGATCAC CGTCAGCCTG
CTGATCGCCG CCGGGGTCGC GCTCGTCCTG TTCGTCATCG CCGAGGCGTT GTCGAAGGCG
CCGCTGCTGC CGCTGCACGT GGTGTGGAAC CGCAACCGGG GCGGCGCGTA CCTCTCGCTC
GGGCTGGCGA TCGTCGGGAT GTTCGGCGCG TTCCTGTTCC TGACCTACTA CCTGCAGTCC
GTGCAGGGCA TGTCGCCGAT CCGCAGCGGC GCGGCGTTCC TGCCGATGGT CGGCGGCATG
CTCATCGGCG CGACGCAGAT CAGCGCGCGG CTGATGACGC GGGTGCGGCC GCGCTACCTG
ATGCCGCCGG GCTTCGTGCT CGGCTCGGCG GGCATGCTCG CGCTGACCCG GATCACGGTC
GGCGGCTCGT ACCACACCTG GATCCTGCCC GGCACGATCG CACTCGGGCT CGGCATGGGC
TGCGCGTTCA TGCCCGCGAT GAACGTCGCC ACCGGCGGCG TCGACCCCCG GGACGCCGGC
GTCGCCTCGG CCATGGTCAA CACCTCGCAG CAGGTCGGCG GCGCGGTCGG CACGGCGCTT
CTCAGTACCC TGGCACTGAG CGCGACCCGT AGCTATTCCG CCAAGCACTC CCCCGATCCG
GTCGCCACAT CGCAGCAGAT TGCGATGCTG CACACACAGG CTCAGGTGCA CGGCTACATC
ACCGCGTTCT GGTGGGCCGC CGGGCTGATG CTCGCCGCGG CGATCGTGTC GTTCGCGTTG
ATCAGCTTCA GAGTCGGCGT TCCGATGCCC TCTGTACCCT CTGTTGCGGC CGCTGTTCCC
ACGACGGCGG GATCCGAAGT CCTCGCCCCA GTTGAGCAGC CCACAGAGAT CCTGCTCCCC
CTCCACGACG CCGTCCCGGC ACACATCCCC TCCCCCTACA ACGGCGACGG CGTCCTCATC
CACGGCCGCG TCCGGGACCG CGACGGCGCC CCGATGCCGC TGGCCGCCAT CACCGCGGTG
TCCCCGCAGG GTCGCCAGGT GGGCCGGGCA CGCAGCGGCG CGGACGGCGG CTACCAGCTC
GGCGTCCCGC GCGTCGGCGC GTACGTGCTC ATCGTCGCCG CGAACGGACG GGAGCCGGAG
GCCTCGACGA TCACCGCGCG CGAGCACAGC GTCCGGCACG ACATCCTGCT GGCCGAGCGC
GGACGGCTGG CGGTGACGGT CCACGCCACC GACGGCAGCC GCATCGGCGG CGCCACCCTG
ATGCTCACCG ACGCCGCCGG CGACCTGCTC ACCAGCCGCC GCACCGGCGA GGACGGCACG
CACACCTTCC GCGACCTGCC CACCGGCCCG CTCACCCTGG CGGTCAACGC CGTGGGCCAC
CGCCCCGCAG CCCTGTCGAT CACGATCGAG GGCCACGGAA CCACCCGCGC CGAGCTCGAG
CTGCACCCGG CGGTCCGCCT GAGCGGCACA GTCCGCGCCT GGTCCACCGA CTCCCCGCTC
GCCGACGCCC GGGTGATGCT GATGGACGGC GCCGGCAACG TAGTGGCCAC CGCCGACAGC
GACCCGGAGG GTTCCTTCGC CTTCGCCGAC CTCGACGCCG GGGAGTACAC GCTCATCGCC
AGCGGCTACC CGCCGGTGGC CAGCGCCGTG CGGGTGGACG GACGGATCGA CAGCCGCCAC
GACGTGCAGC TGGGATACCC GGAGTGA
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| Protein sequence | MSSTNGASSL VDPRRWKALA FVGLAQLMVV LDGTVVNIAL PSAQRDLGFS DADRQWVVTA
YALPFGALLL FGGRLADRLG RKRTFQIGVI GFALASALGG ASADTAMLLG ARALQGCFGA
MLAPSALSLV TVMFTAPAER AKAFGIWGSI AGGGAAVGLM LGGLLTQYLS WRWTMFVNVV
FAVIAFSGAA ITVREPARRH DHGRLDFLGI FLVTGGLGCL VYGLSRAESD GWNARITVSL
LIAAGVALVL FVIAEALSKA PLLPLHVVWN RNRGGAYLSL GLAIVGMFGA FLFLTYYLQS
VQGMSPIRSG AAFLPMVGGM LIGATQISAR LMTRVRPRYL MPPGFVLGSA GMLALTRITV
GGSYHTWILP GTIALGLGMG CAFMPAMNVA TGGVDPRDAG VASAMVNTSQ QVGGAVGTAL
LSTLALSATR SYSAKHSPDP VATSQQIAML HTQAQVHGYI TAFWWAAGLM LAAAIVSFAL
ISFRVGVPMP SVPSVAAAVP TTAGSEVLAP VEQPTEILLP LHDAVPAHIP SPYNGDGVLI
HGRVRDRDGA PMPLAAITAV SPQGRQVGRA RSGADGGYQL GVPRVGAYVL IVAANGREPE
ASTITAREHS VRHDILLAER GRLAVTVHAT DGSRIGGATL MLTDAAGDLL TSRRTGEDGT
HTFRDLPTGP LTLAVNAVGH RPAALSITIE GHGTTRAELE LHPAVRLSGT VRAWSTDSPL
ADARVMLMDG AGNVVATADS DPEGSFAFAD LDAGEYTLIA SGYPPVASAV RVDGRIDSRH
DVQLGYPE
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