Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4319 |
Symbol | |
ID | 8335673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4902769 |
End bp | 4903707 |
Gene Length | 939 bp |
Protein Length | 312 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644957422 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_003115024 |
Protein GI | 256393460 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.778687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.00185272 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCACATC TCGCCGAACC AGCGGCCGAC GCCCCGGCGC GGCCGCGCGG ACCGGAGCGC CGGGGCAGGA GCCGGCGGTC CCGGTTCAAC CCCGCGTACC TGTTCGTCGC GCCCGCGTTC CTGCTGGCCG CCGTGTTCAT CGTGTGGCCG ATCGTCCAGT CGGGCTGGAT GAGCCTGCAC GATTGGACGA TCGGCGACGG CTCGCACAAG TGGCTGGGCT TCGGGAACTA CACCGAGCTC TTTCACGACT CACGCTTCTG GAACGCCCTG AAGGTGACGC TCGTGTACGC CGTCTTCGTC GTCGTCGGCC AGGTGGCGAT CGGCCTGGCG CTGGCCCAGT GGCTGCGCCG GACCACCTGG TACACGATGC TGCTGCGCTC GGCGTTCTTC TTCCCGACGA TCGCCTCGCT GGCCGTGTCC GGCATCGTCT GGAAGTTCCT GCTGGACCCG CAGGTCGGGC TCGTCGACGG CTGGCTCGGC AAGCTGGGCT TCCCCACACA AGCCTGGTTG CAGGACACGC ATCTGGCGCT GCCCGCGCTG ATCGTGGTCG GGATCTGGAA GAACTTCGGG TTCTCGATGA TCGTCCTGCT CGCCGGGGTC CAGGGGGTCA GCAGGGAACT GCTGGAGGCC GCGACGCTGG ACGGCGCCGG CGCGATCGCG CGGTTCCGGC ACGTCACACT GCCCGCCCTG CGTCCGGCGA TCCTGTTCAC GGTCGTGATC GGCACGGTCA ACGCCCTGCA ACTGTTCGAC CTGACGTACG TGATGACCGA CGGCGGTCCG CTGTTCCACA CCGAGTCCAT CGTCATGTAC CTCTACCAGC GCGGATTCGT CGACTTCCGG CTCGGCTACG CCAGTGCGAT CGCCTGGGTG CTGTTCCTGA TCATCATCGC CGTGTCCGTC GTGCAACTCC GAATGCTGAG GTACCGCGAT GACGACTGA
|
Protein sequence | MAHLAEPAAD APARPRGPER RGRSRRSRFN PAYLFVAPAF LLAAVFIVWP IVQSGWMSLH DWTIGDGSHK WLGFGNYTEL FHDSRFWNAL KVTLVYAVFV VVGQVAIGLA LAQWLRRTTW YTMLLRSAFF FPTIASLAVS GIVWKFLLDP QVGLVDGWLG KLGFPTQAWL QDTHLALPAL IVVGIWKNFG FSMIVLLAGV QGVSRELLEA ATLDGAGAIA RFRHVTLPAL RPAILFTVVI GTVNALQLFD LTYVMTDGGP LFHTESIVMY LYQRGFVDFR LGYASAIAWV LFLIIIAVSV VQLRMLRYRD DD
|
| |