| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4305 |
|---|
| Symbol | |
|---|
| ID | 8335659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4884558 |
|---|
| End bp | 4885379 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644957408 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003115010 |
|---|
| Protein GI | 256393446 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.272884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0022322 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGGA CCAAGGCGGA GAAGATCCGC CTCGAAGCCG TCACCAAGAC GTTCGAAGTA
CGCGACGGCG GCACGTTCAC CGCGCTGGAA GACGTCACGC TCGACGTGGC GCCAGGGGAG
TTCCTGGTCG TGGTCGGACC CAGCGGCTGC GGCAAGTCCA CACTGCTGGA TCTCGTCAGC
GGCCTGACGA AGCCCACCGG CGGCCGGATC CTGCTGGACG GCGCGCCGGT GACCGGTCCC
GCGCTCGACC GCGGCATCGT CTTCCAGCAG TACGCGCTGC TGCCGTGGCG CACCGCGCTG
CGCAATATCG AGTTCGCCCT GGAAGCGCAG CCGCGCCTGG ACCGGCTCAG CCGCAAGAAT
CGCGTCGAAC GCGCTCGCGA GTACTTGGAT CTGGTCGGGC TGTCAGGGTT CGAAGACCGC
TACCCGCACG AGCTCTCCGG CGGCATGCGC CAGCGCGTCG CCATCGCCCG GGCGCTGGTC
GCCGACCCGG CAGTGCTGCT GATGGACGAG CCGTTCGCGG CCCTGGACGC CCAGACCCGC
GAGCAGCTCC AGGAGGAGCT GCTGCGGATC TGGCACAAGA CCGGCACGAC CGTCGTCTTC
ATCACCCACG GCATCGACGA GGCCGTCTAC CTCGGGCAGC GGGTCGCCGT GATGACCTCG
CGGCCCGGCC GGATCAAGCA GGTCGTCGAG GTGCCGCTCG GGGACCGGCA GGCCGACGAC
GACGTGCGCT CCAGCCCGGA GTTCGCCGCC CACCGCCATC AGGTGTGGAG CCTGCTGCGC
GACGAGGTCA CCGCTGTCAG GGAGGTCGTT TCCGTTGGCT GA
|
|---|
| Protein sequence | MPGTKAEKIR LEAVTKTFEV RDGGTFTALE DVTLDVAPGE FLVVVGPSGC GKSTLLDLVS
GLTKPTGGRI LLDGAPVTGP ALDRGIVFQQ YALLPWRTAL RNIEFALEAQ PRLDRLSRKN
RVERAREYLD LVGLSGFEDR YPHELSGGMR QRVAIARALV ADPAVLLMDE PFAALDAQTR
EQLQEELLRI WHKTGTTVVF ITHGIDEAVY LGQRVAVMTS RPGRIKQVVE VPLGDRQADD
DVRSSPEFAA HRHQVWSLLR DEVTAVREVV SVG
|
|---|
| |