Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4229 |
Symbol | |
ID | 8335583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4796011 |
End bp | 4798782 |
Gene Length | 2772 bp |
Protein Length | 923 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644957332 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003114934 |
Protein GI | 256393370 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.099423 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATGG TGGGTCGGGA AGCGGAGCAG GCCGAACTCG CGGCGTTCGT CAAAACCGCC GCGGGTCAGG CGCTGGTCCT GCGCGGGGAG ACCGGCGTGG GCAAGAGCTC GCTGCTGGGC CACGCCGCCG CGGTGGCCGA GCAGGAGGGC TACGCCGTCA TCCGCGCCTC GGGCGTCGAG GCGGAGTCCG AGCTGCCCTA CGCCGGGCTG CACCAGTTCC TGCACCCGCT GCTGGCCGAC GTCGCCGACC TCGACGATGG CAGCCAAGAG GTCTTCGACG CCGTCTTCGG CCGCGCCGAC AGCGACCCGC CGTCGGTCAT GACCCTGGGC ATCGCCGTCC TGAGCCTGCT GTCCCTGGCC GCCGCGCGCA AGCCGCTGCT CCTGGTCCTG GACGACGGGC AATGGCTCGA CGACTCCAGC GCCGACATCT GCGGCTTCGT CGGCCGCCGC CTGGCCGGCA GCCCGGTGAA GCTGCTGGTC GGCGTCCGCA CCGACATCGC CTCGCGCTTC GACACCGCCG CGCTGCCCGA ACTCCCGATC GCCGCCCTGA ACGACCAGGA CGCCGCGGCC CTGCTGACGC AGCGCTTTCC GACGCTGGGC AAACAGATTC GGCGCCTGGT GTTGACCCAA GCCCAAGGAA ACCCGCTGGC GTTGCTGGAG CTGCCGGCAC ACCTCGGCGG CGCGGCGATC CAAGGCGAGC CGGCGCTGGA AAGCCTCGTC GGCGACCTCG GCATGCCGCT GCCCCGGCGG CTGCAACGCC TCTACGGCAG CCGCATCGCA GCCCTGAGCG ATGCCATGCG CGCCGAGCTG CTGATGGGAG CCCTCGACGG CGCCGGCGCC GGAGCCCGGC TCAGCCGCGG CGAGGCCGGA AGCGGACCCG GCGCGCGCTA CCGCATGCGC GACGCCGACG AAGCAGTAGC CGCCGGACTG CTGGAGATCG AACCGGCCAC CGGCGACTTC GCCTTCCGTC ATCCGCTGGT GCGCTCGGCG GTGGTGCAGA TGGCGACCCC CAACCAGCGC CGTGCAGCTC ATCGCGCCCT GGCCCAGATC CACCGCGAGC ACCTGGAACG CCGCGCGACC CACCTCGCCG CCGCGACCGT CGACCCCGAC GAGGAGGTCG CCGACATCCT GGAGGCGGCG GCCGAGTCGG CGACCAAGCG CGGCGGCGCC CTGGCCGCGG TGGCGTGGCT GACCCGCGCC GCCGAACTCA GCGTGGAGCA CACCAGCCGC TCCCGGCGGC TGGCTGACGC CGCGTTCGTC GCCGGGCACG CCGCGCGCCT CGGTCAGGCG CACCGCCTCG TGCAGTACGG ACTCGCGCCG GGTTCGACCG ACTCGGCGGC GTCGGTACTG GCCTCGGCGT ATCAGGCGCT GTATCAGGAC GGCGACGTCC TCTCCACGCA CCGCCAGGTC GCCCTGGCGA TCCAGAAGCT GCGTGACACC GGTCCCACCG AAGCCGACGA AGTCCTGACC CGGCTGGTCA ACCTCCTGCT GGCGATCAGC CAGTACGCCG GGGACCGCGC AGCCTGGGAA CGTACGCAGG CGCTCCTAGC CGATCTGGGA GACCTGATCA CCGAACGCTC ACGCCTGTAC GGCGACACCT GGAGCGACGT GATCCGGCAC GGCGCCGGCA GCGCCGAGGT GATCGAACAG GCTGCTGCGA AGGTGGCGGG TCAGGAACCG TGGGAGGTCA CGCGCCTGGC GGTCGCGGCA TATCACCTTG ACATCCTCAG CCGCTTCCGT CCGCACCTGC GTGGCATCGT GGACCGCGAG TTGGAGACCG GCGCTGTCGC CAGCGGCATG GTCATGCTCC ACCTGATCAT GCTGGACCAG ATGGCGGTCG GCGAGTGGGA CGGCGCGCAG GACACCGGAC GGCGCGTGCT GGCGCTGGCC GTCGAGCACG GTCACGAGCT GTTCGCCACG CAGAGCCGCG CCTACCTCGC CCAGCTCGCC GCGCTGCGCG GACAGCTGGG ACCGGCGCGC GACTTGCAGG CCGAAGTGGA CGCTTGGGCC CGCCCGCGCG GACTCGGCTT CCTGACTCAG CTCGCTGACT CCGCCGGCGC GACGGCTGCG CTGAGCGCAG GCGACTACGA GACCGCCTAC CTATACGCCA TCGGCATCAC GCCGCCGGGG GAGTTCCGCC CCTATGCGTA TCAGGCTTCG CGGACGCTGC TGGACTTGGT CGAAGCCGCC CGCCACACCG GGCGCACTGA GCAGGCGCGG CAGCATGCCC TGGCCGCACG CGACGCCGAC CTGCCGAAGA TCTCCCCGCG TCTGGCGCTG CTGACCTACG GCGCGCTGGC GATGACCGCC GACGGCGAAC ACGAGGCGGC GGAGATGTTC GCACTGGCCG AAGCACATCC CGACGCGGCC CGGTTCCCGT TCGAGCTGGC GCGCATCAGG CTGGCGCACG GGATCCGGGT ACGGCACGTC GAGGGTCGTG CGGCGGCGCG GCGATATCTG GTCCCGGCGG CGGAGGCTTT CGAGCGGTTG GGCGCTGCGG GCTGGACCGA GCGTGCGCGC GCTGAGCTGC GCGCGACCGG CGCCGTGCCG CGCGCCTCGA TGCTGAATCT GGCGTCGCTG ACCTGGCAGG AACGCCGGAT CGCGGATCTG GCGGCCAGCG GGCTGACGAA CAAAGAGATC GGCAAGCGGA TGCACTTGTC GCCGCGCACC GTCAGCTCCC ACCTGTATCG GATCTTTCCG AAGCTGGGGA TCACGACGCG CGCCGCGTTG CGGGACGCGT TGAGCCGGAC GGAGGAAGGT CCGCAGAGTT GA
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Protein sequence | MAMVGREAEQ AELAAFVKTA AGQALVLRGE TGVGKSSLLG HAAAVAEQEG YAVIRASGVE AESELPYAGL HQFLHPLLAD VADLDDGSQE VFDAVFGRAD SDPPSVMTLG IAVLSLLSLA AARKPLLLVL DDGQWLDDSS ADICGFVGRR LAGSPVKLLV GVRTDIASRF DTAALPELPI AALNDQDAAA LLTQRFPTLG KQIRRLVLTQ AQGNPLALLE LPAHLGGAAI QGEPALESLV GDLGMPLPRR LQRLYGSRIA ALSDAMRAEL LMGALDGAGA GARLSRGEAG SGPGARYRMR DADEAVAAGL LEIEPATGDF AFRHPLVRSA VVQMATPNQR RAAHRALAQI HREHLERRAT HLAAATVDPD EEVADILEAA AESATKRGGA LAAVAWLTRA AELSVEHTSR SRRLADAAFV AGHAARLGQA HRLVQYGLAP GSTDSAASVL ASAYQALYQD GDVLSTHRQV ALAIQKLRDT GPTEADEVLT RLVNLLLAIS QYAGDRAAWE RTQALLADLG DLITERSRLY GDTWSDVIRH GAGSAEVIEQ AAAKVAGQEP WEVTRLAVAA YHLDILSRFR PHLRGIVDRE LETGAVASGM VMLHLIMLDQ MAVGEWDGAQ DTGRRVLALA VEHGHELFAT QSRAYLAQLA ALRGQLGPAR DLQAEVDAWA RPRGLGFLTQ LADSAGATAA LSAGDYETAY LYAIGITPPG EFRPYAYQAS RTLLDLVEAA RHTGRTEQAR QHALAARDAD LPKISPRLAL LTYGALAMTA DGEHEAAEMF ALAEAHPDAA RFPFELARIR LAHGIRVRHV EGRAAARRYL VPAAEAFERL GAAGWTERAR AELRATGAVP RASMLNLASL TWQERRIADL AASGLTNKEI GKRMHLSPRT VSSHLYRIFP KLGITTRAAL RDALSRTEEG PQS
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