Gene Caci_3974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3974 
Symbol 
ID8335327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4510456 
End bp4511268 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content70% 
IMG OID644957088 
Producthypothetical protein 
Protein accessionYP_003114691 
Protein GI256393127 
COG category[S] Function unknown 
COG ID[COG4549] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.113102 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.378108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGGTC ATCAACGATC CTCACGCGCT GTCAGAGCCA GGAAACCGCT GGCAGCGGTC 
CTAGCCGGCA CAGCGTTGTC CATTCTCGGC TCCGCCGGCG CGGCTTCGGC ACACGTCACC
ATCGGGCCCG ACGCGACCGC CAAGGGCGGC CGCGATGTGG AGCTGACCTT CCGGGTCCCC
GACGAGGAGG CCACGGCGAC CACCACGAAG GTCGAAGTCG TCTTCCCCAC CGACCACCCC
GTCACCGGCG TGCTGCCCGA ATCCACTCCC GGCTGGACGG TCGCGGTGAC GAACTCCACG
CTGCCCAAAC CCGTCACCGC CGACGACGGC ACCGTCAGCC AGGCCGTCTC GAAGCTCACC
TGGACCGGCG GGGCAACGGC GCCGGGGCAG TACCAGGGCT TCCGGGTGAT GCTGGGCAAG
CTGCCCGACG ACACGAACCA GTTGGTCTTC AAGGCTGTTC AGACGTACTC CAACGGCGAC
GTGGTGCGCT GGATCGATCT GGCGCAGCCC AGTCAGCCCG CGCCGGAGCA TCCGGCTCCG
GTCCTGGTGC TGACCGCGCC CGGTTCCGGC TCGCAAACCT CGGACACCGC GGACACTGCG
GCCAGCACAC CGTCGGTCAC CGCCGCCCCG GTAACACCGA ACTCAGCGAG CAGTGACACA
ACCGCACGGA CGCTGGGGAC CGCAGGCATC GTGGTCGGCG TCGCCGGGCT GGCGGTGGGC
GCGTTCGGCG TGTCGAGGGC GCGCCGCAAG AGCTCCGACT CCACTTCAGG CGCCACCTCC
ACATCCGCCC CCACGTCCAC TCCTCCGGGT TGA
 
Protein sequence
MSGHQRSSRA VRARKPLAAV LAGTALSILG SAGAASAHVT IGPDATAKGG RDVELTFRVP 
DEEATATTTK VEVVFPTDHP VTGVLPESTP GWTVAVTNST LPKPVTADDG TVSQAVSKLT
WTGGATAPGQ YQGFRVMLGK LPDDTNQLVF KAVQTYSNGD VVRWIDLAQP SQPAPEHPAP
VLVLTAPGSG SQTSDTADTA ASTPSVTAAP VTPNSASSDT TARTLGTAGI VVGVAGLAVG
AFGVSRARRK SSDSTSGATS TSAPTSTPPG