| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3908 |
|---|
| Symbol | |
|---|
| ID | 8335261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4432035 |
|---|
| End bp | 4432706 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644957034 |
|---|
| Product | CRISPR-associated protein, Cse2 family |
|---|
| Protein accession | YP_003114637 |
|---|
| Protein GI | 256393073 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02548] CRISPR system CASCADE complex protein CasB/Cse2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000211783 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.232688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTA CCAGCGCCAC GACAGTCAAC GCTCCAGCCC CGGCGGGCCC GCCACCGATT
CACGAGCTCG TGAAGGAGAT CGCCAACGCC CATATCCGCA AGTTGCAGGG CGGCTACTTG
AACGACCGTC CAGAGGCCGT GGCCGCTCTA GCGCGGATTC GGCGCGGTGT GGGCAAGCCA
CTCCACGCCG TCCCGGACCT GTGGGGGTTG GAAGGCACGG ATCGGCTTTA CACGGATATC
CCCGATCGCA GGGAAAACGA GCGGCTGCGC GCTGAGAACG CCGTGCACAT CGCAGTAACG
CTCTGGGCGG TGCATCAGCA GTCACGCCGC GATTCGCCGA TGCATGTCGC GGGTGGGCCA
CAGCTGGGAC GAGCTGTCCG TGCTCTGATG CCCGGCGATG ACATCGACGA GCCGTTGCGG
CGCCGCTTCG TCCGAATCGG CACGGCCACC TCCCTGGACA CACTCGCGCA GCGTCTGCGC
GATGTCGTCC TTGTTCTGCG ACAGCACACG CAAGCGATGG ACTACGCCGC GCTCGCCGAA
CAGATCTATC ACTGGCAAAT GCCTGATCGG CGAGCCAGAG TCCGCAGGGA TTGGGGACGG
AACTTCCACG CCCGAGCACA ACAGGGCACG CCAGACACTC AAGGAACCGA GCAGACAAAG
GAAGCCTCAT GA
|
|---|
| Protein sequence | MTTTSATTVN APAPAGPPPI HELVKEIANA HIRKLQGGYL NDRPEAVAAL ARIRRGVGKP
LHAVPDLWGL EGTDRLYTDI PDRRENERLR AENAVHIAVT LWAVHQQSRR DSPMHVAGGP
QLGRAVRALM PGDDIDEPLR RRFVRIGTAT SLDTLAQRLR DVVLVLRQHT QAMDYAALAE
QIYHWQMPDR RARVRRDWGR NFHARAQQGT PDTQGTEQTK EAS
|
|---|
| |