| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3808 |
|---|
| Symbol | |
|---|
| ID | 8335161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4307496 |
|---|
| End bp | 4308779 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644956947 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_003114550 |
|---|
| Protein GI | 256392986 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.750227 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGAA GGAAGTTCCT CACGTTCTGC GCCACCGCGG CAGCCGCCGC ACCCCTGGCA
GCGTGCGGCT CGAGCAAGAG TTCCCCCGCC GGCGCGGCGG CCGCCGACAG CTCCCCGGTC
GAGCTGACGG TCAGCGTCTG GAGCCTGGCC TCGACCCCTG AGTTCCACGC CTTGTTCGAC
GCCTTCCACC AGGCGAACCC GAACATCACC ATCAAGCCCG TCGACATCCT CGCCGCCGAC
TACCCGACCA AGGTCACCAC CATGCTCGCC GGCGGCGACA GCACCGACGT CATCACGATG
AAGCAGGTCA GCGACTACTC CCTCTACGCC GCGCGCGGGC AGCTCAAGGA CCTGACCTCG
ATCGCCACCT CGGGTGCGGC CGCGACGCTC AACGGCCTCG ACAGCTACAA GACGAAGGAC
GGCAAGTACT ACGCCCTGCC CTATCGGCAG GATTTCTGGG TCCTGTTCTA CAACAAGAAG
CTCTTCACCG CGGCGGGCAA GCAGGCTCCG GACAACCTCA CCTGGGACCA GTACAGCGAC
CTGGCCAAGT CCGTCACCAC CGGCTCCGGC GGCGACAAGG TCTACGGCAC GTACCACCAC
ATCTGGCGCT CGGTGGTCCA GGCGATATCG GCCGCGCAGA CCGGTGGGAA CCTGCTCGGC
GACGACTACA GCTTCTTCAC CGACCAGTAC AAGATGGCGC TCGGGATCCA GGACGCGGGC
GCGACGCTCG ACTTCGCCAC CGCGACCACG CAGAAGACCG GGTACGCGAC GGTGTTCGAG
ACCTCGAAGG CCGCGATGCT GCCGATGGGC ACGTGGTTCA TCGCCAAGCT GCTCGCGGAC
AAGAAGTCCG GCGACACCGA CGTCGACTGG GCCATCGCGC CGATGCCGCA GCGGCCGGGC
GGGAGCACGG TCACCACGTT CGGTTCGCCG ACGGCGTTCG CCGTCAACAA GAAGGCCAAG
CACGCGGCCG CGGCCGAGAA GTTCGTCCAG TTCGCCGCGG GTCCCGAGGG GGCCAAGGCG
ATCACCGCGA TCGGCGTCGT GCCCTCGCTG CTGTCCGACC AGACTCGGCA GGACTACTTC
GCGCTGACCG GGATGCCGAC GGACGACGTC TCGAAGAAGG CGTTCAAGCC GGACAAGGTC
GTGCTGGAAA TGCCGGCCAG CGACAAGTCC TCGAAGATCG ACGCGATCCT CACCGAGGAG
CACCAGCTGG TCATGACCAA GCAGAAGTCC ATCGACGCCG GGATCAAGGA GATGGGCTCC
CGCGTCAAGA ACGAAGTCAG CTAG
|
|---|
| Protein sequence | MDRRKFLTFC ATAAAAAPLA ACGSSKSSPA GAAAADSSPV ELTVSVWSLA STPEFHALFD
AFHQANPNIT IKPVDILAAD YPTKVTTMLA GGDSTDVITM KQVSDYSLYA ARGQLKDLTS
IATSGAAATL NGLDSYKTKD GKYYALPYRQ DFWVLFYNKK LFTAAGKQAP DNLTWDQYSD
LAKSVTTGSG GDKVYGTYHH IWRSVVQAIS AAQTGGNLLG DDYSFFTDQY KMALGIQDAG
ATLDFATATT QKTGYATVFE TSKAAMLPMG TWFIAKLLAD KKSGDTDVDW AIAPMPQRPG
GSTVTTFGSP TAFAVNKKAK HAAAAEKFVQ FAAGPEGAKA ITAIGVVPSL LSDQTRQDYF
ALTGMPTDDV SKKAFKPDKV VLEMPASDKS SKIDAILTEE HQLVMTKQKS IDAGIKEMGS
RVKNEVS
|
|---|
| |