Gene Caci_3704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3704 
Symbol 
ID8335057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4155838 
End bp4156899 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content72% 
IMG OID644956844 
Producttranscriptional regulator, LacI family 
Protein accessionYP_003114447 
Protein GI256392883 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00247071 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCCCA CGCCAGCCCG CCGCCTTTCC GAAGTCGCCC AGAAGGTCGG CGTCAGTGAG 
GCCACCGTGA GCAGGGTCCT CAACAACAAG CCCGGCGTCG CCGAGGGCAC CCGCGAAGCC
GTGCTCACCG CCCTGGACGT CCTGGGCTAT GAGCGCCCGA CCCAACTGCG CGGCGAGCGG
GCCCGGCTGA TCGGCCTGGT CCTGCCGGAA CTGCAGAACC CGATCTTCCC GGCGCTGGCC
GAAGTCGTCG GCGGCGCGCT CGCTCAGCGC GGCTTCACCC CGGTCCTGTG CACCCGTACC
GCCGGCGGCC TGTCGGAGTC GGCGTACGTC GACATGCTGC TGGACCAGCA CGTCTCCGGC
GTGGTGTTCT GCGGCGGCCA CTACGCCGAG GCCGACGCGC CCCACGACCA CTACCGGCTG
CTCAAGGACC GCGGAGTTCC GGTCGTGCTG TTCAACGCGG CCGTGGAAGA CCTCGGCTTC
CCGGCGGTGT CCACCGACGA CGAGGTCGCC TGCGAGCAGT CCTACGGACA CCTGGAATCG
CTCGGCCACG AGCGCGTCGG GCTGGTCGTC GGACCCGAGG ACCACATGCC CTCGCGGCGC
CGGGTCGCGG CCTTCCTGGC CGAGGCGGAG CGGGCCGCGA AGCGTGCGCC GGGCTATGGC
GCGCGGCGCT TGTCGGTCGT TGTGGAGCAC GCGCAGTTCT CGATGGAGGG CGGCCGGGCG
GCGACCGCGC GGGCCCTGGC GCAGGGCGTC ACGGCTGTGG TGTGCGGCAG CGACGTGCTC
GCCCTCGGCG CGATCCGGGC GGTGCGCCGC TCCGGTCTGG ACGTCCCGCG CGACGTCTCG
GTCGTCGGCT TCGACGACTC CAGCTTCATG AACTGCACCG ACCCGGCGCT GACCACGGTG
CGCCAGCCGA TCGAGGCGAT GGGTCGGGCC GCGGTGGCGA TGCTGCTCAA GCAGGTCGAA
GGCGGGCGGA TGAACACCGA GGAGCTGCTG TTCGAGCCCG AGCTGGTGGT CCGCGGATCG
ACCGGTCCGG TCCGCGATCC GGGCGCCGGA ATCGCCGCCT GA
 
Protein sequence
MTPTPARRLS EVAQKVGVSE ATVSRVLNNK PGVAEGTREA VLTALDVLGY ERPTQLRGER 
ARLIGLVLPE LQNPIFPALA EVVGGALAQR GFTPVLCTRT AGGLSESAYV DMLLDQHVSG
VVFCGGHYAE ADAPHDHYRL LKDRGVPVVL FNAAVEDLGF PAVSTDDEVA CEQSYGHLES
LGHERVGLVV GPEDHMPSRR RVAAFLAEAE RAAKRAPGYG ARRLSVVVEH AQFSMEGGRA
ATARALAQGV TAVVCGSDVL ALGAIRAVRR SGLDVPRDVS VVGFDDSSFM NCTDPALTTV
RQPIEAMGRA AVAMLLKQVE GGRMNTEELL FEPELVVRGS TGPVRDPGAG IAA