Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3704 |
Symbol | |
ID | 8335057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 4155838 |
End bp | 4156899 |
Gene Length | 1062 bp |
Protein Length | 353 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644956844 |
Product | transcriptional regulator, LacI family |
Protein accession | YP_003114447 |
Protein GI | 256392883 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00247071 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCCCA CGCCAGCCCG CCGCCTTTCC GAAGTCGCCC AGAAGGTCGG CGTCAGTGAG GCCACCGTGA GCAGGGTCCT CAACAACAAG CCCGGCGTCG CCGAGGGCAC CCGCGAAGCC GTGCTCACCG CCCTGGACGT CCTGGGCTAT GAGCGCCCGA CCCAACTGCG CGGCGAGCGG GCCCGGCTGA TCGGCCTGGT CCTGCCGGAA CTGCAGAACC CGATCTTCCC GGCGCTGGCC GAAGTCGTCG GCGGCGCGCT CGCTCAGCGC GGCTTCACCC CGGTCCTGTG CACCCGTACC GCCGGCGGCC TGTCGGAGTC GGCGTACGTC GACATGCTGC TGGACCAGCA CGTCTCCGGC GTGGTGTTCT GCGGCGGCCA CTACGCCGAG GCCGACGCGC CCCACGACCA CTACCGGCTG CTCAAGGACC GCGGAGTTCC GGTCGTGCTG TTCAACGCGG CCGTGGAAGA CCTCGGCTTC CCGGCGGTGT CCACCGACGA CGAGGTCGCC TGCGAGCAGT CCTACGGACA CCTGGAATCG CTCGGCCACG AGCGCGTCGG GCTGGTCGTC GGACCCGAGG ACCACATGCC CTCGCGGCGC CGGGTCGCGG CCTTCCTGGC CGAGGCGGAG CGGGCCGCGA AGCGTGCGCC GGGCTATGGC GCGCGGCGCT TGTCGGTCGT TGTGGAGCAC GCGCAGTTCT CGATGGAGGG CGGCCGGGCG GCGACCGCGC GGGCCCTGGC GCAGGGCGTC ACGGCTGTGG TGTGCGGCAG CGACGTGCTC GCCCTCGGCG CGATCCGGGC GGTGCGCCGC TCCGGTCTGG ACGTCCCGCG CGACGTCTCG GTCGTCGGCT TCGACGACTC CAGCTTCATG AACTGCACCG ACCCGGCGCT GACCACGGTG CGCCAGCCGA TCGAGGCGAT GGGTCGGGCC GCGGTGGCGA TGCTGCTCAA GCAGGTCGAA GGCGGGCGGA TGAACACCGA GGAGCTGCTG TTCGAGCCCG AGCTGGTGGT CCGCGGATCG ACCGGTCCGG TCCGCGATCC GGGCGCCGGA ATCGCCGCCT GA
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Protein sequence | MTPTPARRLS EVAQKVGVSE ATVSRVLNNK PGVAEGTREA VLTALDVLGY ERPTQLRGER ARLIGLVLPE LQNPIFPALA EVVGGALAQR GFTPVLCTRT AGGLSESAYV DMLLDQHVSG VVFCGGHYAE ADAPHDHYRL LKDRGVPVVL FNAAVEDLGF PAVSTDDEVA CEQSYGHLES LGHERVGLVV GPEDHMPSRR RVAAFLAEAE RAAKRAPGYG ARRLSVVVEH AQFSMEGGRA ATARALAQGV TAVVCGSDVL ALGAIRAVRR SGLDVPRDVS VVGFDDSSFM NCTDPALTTV RQPIEAMGRA AVAMLLKQVE GGRMNTEELL FEPELVVRGS TGPVRDPGAG IAA
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