Gene Caci_3566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3566 
Symbol 
ID8334919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3979249 
End bp3979926 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content70% 
IMG OID644956709 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003114312 
Protein GI256392748 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACCG AAACAGCGCC GCCGCCCGCG CGAGCCACGG CGCCCTCGGC GCGCACGACG 
CGCTCGACGC CCTCAAAAGG CAAACGGCTG ACCCGCAAGG GCGAGGAGAC CAGGCGCCGG
ATCGTGGCCG CCGCGGCGCA GCTGATGTAC GAGCGCGGCC TGACCGAGGC GACGCTGGAG
GACGTGCGAG CGGCCGCCGG GGTGAGCGGC TCGCAGATCT ACCACTACTT CGCCGACAAA
CAGGCACTGC TGCTCGCGGT GATCGACCAT CAGACCGAGG CGGTGCTGGA GATGCAGCAT
CCGCTCTTCG ACCGCCTGGA CACCATGGAC GGACTGCGCG CGTGGCGTGA CGCGCTGGTC
GAATTCCAGC GCCGGCTCCA ATGCCGAGGC GGCTGCCCGA TCGGCTCACT CGGCAGCGAG
GTCGCCGAGA ACAACCCCGA GGCCCGGCTC GCCGTGGCGT CGGGCTTCCT GCGCTGGGAA
GCCGCGATCC AGACAGGCCT GGCGGCCATG CACGCACGCG GCGAACTCGA CGCCGACCCC
GATGACCTCG CCCTGGCCAC CCTCACCGCA CTCCAGGGCG GACTGCTGCT CACGCAGATC
CAGCGCACGG TCAGACCGCT GGAGGTAGCC CTGGACACCA TGCTCGACCA CATCGAATCC
CGGATCCGGA AGCCCTGA
 
Protein sequence
MDTETAPPPA RATAPSARTT RSTPSKGKRL TRKGEETRRR IVAAAAQLMY ERGLTEATLE 
DVRAAAGVSG SQIYHYFADK QALLLAVIDH QTEAVLEMQH PLFDRLDTMD GLRAWRDALV
EFQRRLQCRG GCPIGSLGSE VAENNPEARL AVASGFLRWE AAIQTGLAAM HARGELDADP
DDLALATLTA LQGGLLLTQI QRTVRPLEVA LDTMLDHIES RIRKP