Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3566 |
Symbol | |
ID | 8334919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3979249 |
End bp | 3979926 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644956709 |
Product | transcriptional regulator, TetR family |
Protein accession | YP_003114312 |
Protein GI | 256392748 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACCG AAACAGCGCC GCCGCCCGCG CGAGCCACGG CGCCCTCGGC GCGCACGACG CGCTCGACGC CCTCAAAAGG CAAACGGCTG ACCCGCAAGG GCGAGGAGAC CAGGCGCCGG ATCGTGGCCG CCGCGGCGCA GCTGATGTAC GAGCGCGGCC TGACCGAGGC GACGCTGGAG GACGTGCGAG CGGCCGCCGG GGTGAGCGGC TCGCAGATCT ACCACTACTT CGCCGACAAA CAGGCACTGC TGCTCGCGGT GATCGACCAT CAGACCGAGG CGGTGCTGGA GATGCAGCAT CCGCTCTTCG ACCGCCTGGA CACCATGGAC GGACTGCGCG CGTGGCGTGA CGCGCTGGTC GAATTCCAGC GCCGGCTCCA ATGCCGAGGC GGCTGCCCGA TCGGCTCACT CGGCAGCGAG GTCGCCGAGA ACAACCCCGA GGCCCGGCTC GCCGTGGCGT CGGGCTTCCT GCGCTGGGAA GCCGCGATCC AGACAGGCCT GGCGGCCATG CACGCACGCG GCGAACTCGA CGCCGACCCC GATGACCTCG CCCTGGCCAC CCTCACCGCA CTCCAGGGCG GACTGCTGCT CACGCAGATC CAGCGCACGG TCAGACCGCT GGAGGTAGCC CTGGACACCA TGCTCGACCA CATCGAATCC CGGATCCGGA AGCCCTGA
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Protein sequence | MDTETAPPPA RATAPSARTT RSTPSKGKRL TRKGEETRRR IVAAAAQLMY ERGLTEATLE DVRAAAGVSG SQIYHYFADK QALLLAVIDH QTEAVLEMQH PLFDRLDTMD GLRAWRDALV EFQRRLQCRG GCPIGSLGSE VAENNPEARL AVASGFLRWE AAIQTGLAAM HARGELDADP DDLALATLTA LQGGLLLTQI QRTVRPLEVA LDTMLDHIES RIRKP
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