Gene Caci_3329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3329 
Symbol 
ID8334682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3676869 
End bp3679361 
Gene Length2493 bp 
Protein Length830 aa 
Translation table11 
GC content76% 
IMG OID644956474 
ProductANTAR domain protein with unknown sensor 
Protein accessionYP_003114077 
Protein GI256392513 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGAGG ACGACATCGC GCCGCGTGAC GATGCCGAGC GCGCTGGACC GCGTGCCGAT 
GCCGAGGCCG CCGGGTCGCG CGACGGTGCC GAGCTCACCG CGTCGCGCGA CGATGCCGAG
GGCGCCGCGT CGCGCGACGC CGCCGAGGGC GCCGCGCCGC ACGACGACGC CGAGCGCACC
GCGCTGCGTG CGGCGGCGCG CGCCTTCGCC GACGAGCGTC GGCAGCTGCT GCACGACCAG
CGCGAGCACC GCCGCGACGC GCTCGTCGAC CAGGCGGTCG GCGTGGTCAT GGCGCGCTCG
GCGTGCGGTT CGGCCGAGGC GGTCGCGCAG CTGGCGGCGA TCGCCGAGCG CAGCCGGCGG
CCGCTGGCCG ATGTCGCCGC CGACGTGGTG GCCGAGGCCT CGGGCCGGTC CGCGGAGCCC
GCGGAGCGCT CCGACACGCT GCGGCTGCGG CCGGAGGTCG CGGGCCTGGA CCGGGCCACC
GACGGCGACG ACCTGGCCCG CGTCCTGGTC GCCGAGGCGC TGGGCTTCTC CCATCCCACC
GGCGCGGCCA TCGGGCTGCT GGATGATGAC GGGACCGTGG CGGTCGTCGG CTCGCACGGC
TTTCCGGCGC GGGGGATCCG GCGCTGGCGG CGGATCCCCC CGGCCGTGGA CTGCTTGATC
AACCGCGCGC TGCGAGCCGG GCGACCGGTC TGGACCGACG CCGGGACCGG CGACGCGCCG
CCGCCCTTGG GCGAGCCGGC CGGCGCCGAC CGGGCCCAGA CCCGGGTCGC GGTGCCGGTG
CGGTTCGGGC GCGCGCTGAT CGGTGCGGTG GAGCTGGCGT GGCCGCCGAA CGCCGAGCTT
GATCAGCAGG CTCGGCGGCA GGCCGAGGCG GTGGTGCTCT CGGTGGGTCC GTCGTTGCTG
CGGACGCTGG GACCTGAAGG GTCCGCGGCA TCAGTGGCAT CCGCGGCATC CGCGGCATCG
GCAGCATCGG CGGCGAGCTC CGCCGGTTCT TCTGCCGCCG ACGACTCACC GTGGCAGGAC
CTGCTGGATC TCATGGAACA GCCGGCGCTC GTGGTGAGCG AGGACCCCGC GGCTCCCGAC
GACGTCCGCC GCTTCCGCGT GATCGCCCGC AATCAGCACG CTGCGGAGCT GGTGAGCCCG
GTCGCCACCG ACGGCACCCT CGCCGAGGCC GCGCCCTGGC TGCTCGCCGA GGATCTGCCC
GAGCGCCTGA TCGCTGTGCT GCACACCGGC GCGCCGTACC GGCTCCGGGT CCAGACCGGT
CCGCTCGGCG TGGACTCGCT CACCGCGGTG CGCGTCGGCG CCGGGACGGT GATCGTGGTC
TGCCATCGCG CCTCCTTGGA CCCGATCGCC GCCGACGGCA CGCTGGAGCG CCTCGCCCGC
TTCGGGACCT GGCGCTGGGA CGTCGACAGC GACCGCGTGG CCTGGTCCGC CGAGGCGCTG
GGGATCGTGG ACGCGCCGGG CTTGGGCGAC TCCGCCGGGA TCGACCGCCC GCCCTACACC
GTGCACCCGG ACGACACCGA AGCCGAGCGC CGCTTCGTCA AGACCCTGAC GGTCGAACGC
CGTCCCGCCG AGGCCGAGTT CCGGATCCTG CACTACGACG GCGAGCCGAC CCGCGTGCGG
GTGGCGGCCG AGCCGGTCGG CGGGGAGGAG GACGCCGCCG AGTCCGGCGC TGTGTCCGGC
GCGGTGGTCG GCGTGGTCCA GGACGTGACC GAGTGGCGCC GCGCCGAGAC CGGCCTGGAA
GTCGCCCGCG TCCAGCTCGC CGCCCAACGC TCCCGCGCCG ACGCCGAACG CCAGCTGGCC
TCGGCGCTCC AGCAGGCCGT CGTGCCCAGC GCGGCCCGCA ACCAGCCGCC GCGCAGCGGG
GTGCAGATCG CCGCGCGCTA CCGCCCGGCC AGCGCCTCGG CCGGCGTCGG CGGGGACTGG
TACTCGGTCT TCCCGCTGCG CGACGACAAG ATGCTGCTGG CGATCGGCGA CGTCGCCGGG
CACGGCCTGC CCGCCGCCTC GGCGATGGCC GACCTGCACC ACGGACTGCG CGGCATGGCG
CTGGCCGAGA CCCGCCCGGG CCGGCTGCTC ACGCTGCTCA ACGAGCTGGT CGAGACCATG
CCGCAGTTCA CCATCGCCAG CGCCTGCGCG CTGCTGTGGG ATCCCGCGAC CCGCCGCCTG
ACCTGGGGGA ACGCCGGGCA TCCGGCGCCG CTGCGGATCC GGGCCGGCGT GGCCACGCCG
CTGTACGACG CGGTGGGACC GATGCTCGGC GCCGATCCGT ACGCCGAATA CGAGGACTGC
GAAGCCGACG TGGCCAGCGG CGACGTGCTG CTGCTGTACA CCGACGGCCT AGTGGAGCGC
CGCCGGGTCG GCGACGACGA AACCATCGCG CATCTGCTCC ACCAGACCAG GTATCCCGAC
GCCGACCTGG ACCATTACGC CGACCGGATC CTCGACAGCG CGCGCTCGGA CACCGACGAC
GACGTGTGCG TGCTGGCCGT CCGCTTCGAA TAG
 
Protein sequence
MNEDDIAPRD DAERAGPRAD AEAAGSRDGA ELTASRDDAE GAASRDAAEG AAPHDDAERT 
ALRAAARAFA DERRQLLHDQ REHRRDALVD QAVGVVMARS ACGSAEAVAQ LAAIAERSRR
PLADVAADVV AEASGRSAEP AERSDTLRLR PEVAGLDRAT DGDDLARVLV AEALGFSHPT
GAAIGLLDDD GTVAVVGSHG FPARGIRRWR RIPPAVDCLI NRALRAGRPV WTDAGTGDAP
PPLGEPAGAD RAQTRVAVPV RFGRALIGAV ELAWPPNAEL DQQARRQAEA VVLSVGPSLL
RTLGPEGSAA SVASAASAAS AASAASSAGS SAADDSPWQD LLDLMEQPAL VVSEDPAAPD
DVRRFRVIAR NQHAAELVSP VATDGTLAEA APWLLAEDLP ERLIAVLHTG APYRLRVQTG
PLGVDSLTAV RVGAGTVIVV CHRASLDPIA ADGTLERLAR FGTWRWDVDS DRVAWSAEAL
GIVDAPGLGD SAGIDRPPYT VHPDDTEAER RFVKTLTVER RPAEAEFRIL HYDGEPTRVR
VAAEPVGGEE DAAESGAVSG AVVGVVQDVT EWRRAETGLE VARVQLAAQR SRADAERQLA
SALQQAVVPS AARNQPPRSG VQIAARYRPA SASAGVGGDW YSVFPLRDDK MLLAIGDVAG
HGLPAASAMA DLHHGLRGMA LAETRPGRLL TLLNELVETM PQFTIASACA LLWDPATRRL
TWGNAGHPAP LRIRAGVATP LYDAVGPMLG ADPYAEYEDC EADVASGDVL LLYTDGLVER
RRVGDDETIA HLLHQTRYPD ADLDHYADRI LDSARSDTDD DVCVLAVRFE