| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3189 |
|---|
| Symbol | |
|---|
| ID | 8334542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3518277 |
|---|
| End bp | 3519464 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644956335 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_003113938 |
|---|
| Protein GI | 256392374 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0446286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAGG TCCTGACGGA CACCCCGGGG GCGGCGAAGC GGGTCTTCCT GAACAGCGCC
GGCAGCTCGC TCATGCCCAC GCCGGTCCTG GAGGAGGTGC TCGGCCACCT GCGCCGCGAG
ACCGAGATCG GCGGCTACGA GGCCGCCGAC GAACGCGAGG CCGACCTCGA GGCCGGCTAC
GGCGTGTTCG CCGAACTGCT CGGCTGCCGC CCCGACCAGG TCGCCTTCAC CGACAGCGCG
ACCCGCTCCT GGCTGGCCGC CCTGGACGCG GTCCCGCTGG GCGCCGGCGA CCGCGTCCTG
GTCGGCGAGG TCGAATACGG CGGCAACGCC ATCGCGCTGC TGATGCGCGC CCAGGCCGTC
GGCGCCTCGG TCGAGGTCGT GCCCAGCGAT GCCGACGGCA CGTTCGCCGC CGACGCCCTG
GCCGCGATGC TCGACGAGCG CGTGAAGCTG GTCTCGGTCG TGCAGGTCCC GACCAACGGC
GGCGTGGTCG CCGACGTGCG CCGCATCAGC GACGCCGTGC ACGCCGCCAC CGGCGCCCTG
GTCCTGCTCG ACGCCTGCCA GGCGGTCGGC CAGCTGGCCG TGGACGCCGA GGCCCTGGAC
GCCGACATCC TCACCGGCAC CGGCCGCAAG TGGCTGCGCG CCCCCCGAGG CACCGGCTTC
CTGGTCGTGC GCGACCGCGC GAAGGCGATC CTGCGGCCCG CACTCGCCGA CCTGCAAGGC
GGCACCTGGA CCGGCGCCGA CCGCTACCTC CTGCGCGACG ACGCGCGGGT GTACGAGCTC
TGGGAGTGCG ACAACGCCGG CCGCCTCGGC CTGACCGCCG CCGCACGCTA CCTGCTGGAC
CTCGGCCTCG ACGCGGTGGA GCAGGAAGTC ACCCGCCGCG CCGAGTACCT GCGCACGGCC
CTGGCCGCGA TCCCCGGCGT CACAGTCCGC GACCTGGGCG CGCGCAAAAG CGGCCTGGTC
ACCTTCGACG TCGCGGGGCT CGCCGCCGGC GAGGTCCAGG CGGCGCTCGC GCGCCAGGAC
ATCGCGGTCA GCATCACCCG CCGGTCCTCG ACCTTCCACG ACATGGCGCG CCGCGGACTG
ACCGAGCTGG TGCGCGCCTC GCCGCACTAC TTCGTGACCG AGCCGCAGCT CGACGCGGCC
GCCGAGGCGG TCGCCGAGCT GGCCCGGGCG GCGGGCGCGC GGTCCTGA
|
|---|
| Protein sequence | MTKVLTDTPG AAKRVFLNSA GSSLMPTPVL EEVLGHLRRE TEIGGYEAAD EREADLEAGY
GVFAELLGCR PDQVAFTDSA TRSWLAALDA VPLGAGDRVL VGEVEYGGNA IALLMRAQAV
GASVEVVPSD ADGTFAADAL AAMLDERVKL VSVVQVPTNG GVVADVRRIS DAVHAATGAL
VLLDACQAVG QLAVDAEALD ADILTGTGRK WLRAPRGTGF LVVRDRAKAI LRPALADLQG
GTWTGADRYL LRDDARVYEL WECDNAGRLG LTAAARYLLD LGLDAVEQEV TRRAEYLRTA
LAAIPGVTVR DLGARKSGLV TFDVAGLAAG EVQAALARQD IAVSITRRSS TFHDMARRGL
TELVRASPHY FVTEPQLDAA AEAVAELARA AGARS
|
|---|
| |