| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3166 |
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| Symbol | |
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| ID | 8334519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 3488227 |
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| End bp | 3495855 |
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| Gene Length | 7629 bp |
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| Protein Length | 2542 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644956312 |
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| Product | YD repeat protein |
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| Protein accession | YP_003113915 |
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| Protein GI | 256392351 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01643] YD repeat (two copies) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000422225 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGTCGCA GACGCCTCAT GGCGGCCGCC GTCGTGACGG CGTTGACGAT CGGCGTCGTG
TCGGGGCTGC CGCACAGCGC GGATCAGGCT CAGGCCGCGG GCAAAACCAA GACCGCCAAG
TACAACGGCA AGTCGGTGGT GACCGACACC CCGATCAAGA CCGGTCCCTG GCACGGCAAG
AACCCTCCGG CTCCGCCGCC TGCCAAGGGC TCGATCCCTT CTCAGACGAC CTTCCCCGCC
GCGGCTCAGG CGGATCTCAC GTTGACGGCT CCGACCGCCT CGGGAGCCCG CACCTCGGCA
TCTGCGGATA CTGTTTCGAA CGTGCCCTAT GCGAGCGCTG CGGGCGTTCC TGTCGCCGTT
GCCGCAGACC CGGCCGACAG TCAGAACCTT GCCTCGTCGG ACCAGCTTCC GTCCCGGGTC
AAGGCGGGAA CCGCGGCGAG CATCCCGACC ACGGTGCACG TGACCGTCAC CGATCATGCG
ACCGCTGTGG CCGCAGGTGT CTCCGGCGAG ATCGTCTCCG TTTCCCGGAC AGACGGGAAG
ACGGGCGCAG CCGACGCCGC CGTCGCCTTG GACTACAGCT CCTTCGGTCA GGCTTACGGC
GGCGACTATG CGTCCCGGCT GGATCTCGTT GCTCTGCCGC CGTGCGCGCT GACCACGCCG
AAGGTCGCCG CATGCCAGAA GGAGACCCCG CTCCGCTTCG CCAATGACGC CACCCACCAG
CGGTTGACCG CATCGGTGAC GATCCCCGGT GGAACCCATC CCAGCGTGAG CACGAAGTCC
GACGGGAAGT CGGCAGCGCC CGGCGGCACG CTGGTCCTCG CGGCCACCGC CACCGGGAGC
GGATCTGCCG GGTCCTACAA CGCCACCTCG CTGTCGGCGT CGAACTCGTG GTCCGAGTCG
AGCAACACCG GGAACTTCAC CTACAGCTAC CCGATCTCTG TGCCGCCGGC CATCGGCGGT
GCCGCGCCGA CTGTGGCCTT GTCCTACGAC TCGGGAGCGG TGGACGGCCA CTCGACCGTG
GAGAACGGGC AGTCGTCCTG GATCGGCGAC GGCTGGGACT ACAGCCCCGG TTACGTCGAA
CGCTCCTACG TGCCCTGTTC GAAGGCCAAG CCGACCTCGT GGTCGACCTC GACCGACAAC
TGCTTCGCGC TGGACGCGAA CGGCAATCCC GTGCCGGCCC TGACCCTGTC GTACGGCTCG
CACGGCGGAC AACTGGTCCA CGACGATGGC GACACCACGA ACACCCACTT CAAGCTGCAG
CAGGACGACG GCACCCAGAT CGACCTGCTA CCGAACACCG CGACGACAAC CGCCACGTCG
GAGATGTTCC GGATGCGGAT GCCCGACGGC ACCACCGCTT ATTTCGGTGC CGATACTGTG
CCCGCGGAGC TGAACAACGG CGTGGCGGTG AAGCCGTTCG GGGCCACCAA CTCGACCTGG
TTCGAGCCGG TCTTCAACAA CCCGGCCGCC AATAGCGTGT GCAAGGACCC GACGAAGGCG
ACCGCGGCGA ACTGCGAAAC TGCCTGGCGC TGGAACCTCG ACTTCGTCGT CGACCCGCAC
GGCAATGTTC AACAGGTCTT CTACAACGCC GATCTCAACG CGTACGGGCG TGGCACCGCG
CAGACCGCCG CGACGTACGT CCGGGGTGGT ACGCCGAAGG AGATCGACTA CGGATGGCAG
CTTTCCGACG CCATCGCGGG CCGGCAACCC GGTGCCAAGG TCTATTTCGG CAGTGTGCAG
CGTTGCGTCG ACCCCGCGTT GGACGGCGGG TACGGAGCTT CCTCCGGGGG CAGCGCGGGA
TGCCAGAGCG CACCGATCAC CAGCGCGAAT CTGCCCGGAT TCCAGGACAC GCCGTATGAC
CTGTACTGCC CGACCACCAA TGCCACCTGC ATCGAAGCGG CGCAGAACTC CCCGACGTTC
TGGTCGACGA TGCGGCTGGC CACCATCGTC ACCGAGGTCC GGGAGAACAA CGCTTGGCAC
TCGGTCGACC AGTACAACCT GTTCGACCAG TTCAACCTGG CCGGTGACCA GAACAACTCG
TTCAACCGGC CGCCTTTGTG GCTGGCGGCG ATCCGTCATT GCGCCGCGGG CAACGTCGAC
ACCCACCAGA TCTGTCTGCC GGCCTCCGGC GCCGGATCGC TGTCCGTGCC GGACGTGACC
TTCGCAGGCT CGGGTGCGCA GATGGCGAAC CGCGTGCCGG GCGTTACCGG CAGCGGTGGG
ACGAACCTGG GCTTGACCCC GATCGACCGT GCCCGCCTGG TCACCATCAC CGATGAGCTC
GGTGCCCAGA CCACGATCAC CTACGACGTG CCCTCGGCCT TCGCGCTCGG CTGTACTGCT
CCGCCGAGCG GGCCTGCCGA CTGGCACAAC ACCAAGCTCT GTTACCCGGA GTACTGGACC
CCGCCGGGCG AGCCTTCTCC GATCACCGAC TGGTTCCACA AATATGTCGT CACCGGGATC
ACGACCAAGG ACGACTCGGG CACCGGTGCG TCTCTGGCCA CGTCGTACAC CTACGACACC
ACGACGGGCG CGGCGTGGCA CTCCAATGAC TCGGAGTTGG TGACCGATCC CAAGGCCCGT
ACTTACGACC AGTACCGCGG TTTCGCCTCC GTCACCACGA CGCAAGGCGA CGGCAGCGAC
ACACCGGCCG GCCAGACGAC GACCACGTAT TTGCGCGGTA TGGACTGGGA CCCGGATATC
AAGGCCGTGG CCGCGGGCGT TGACTGTCCG AACACCGCAG CGGGTATCAC GCAGGCCGAG
TGCCCACGCG TGAGCGTCAG GGACTCCCAG GGCGGATCGA CGACCGACGA CGTGATCTTC
AACGGCGAAG CGCTGGAGAC TCAGACCTTC ACAGCGGCCA ACGGCAGCGT GTGGAACGAC
ACCGTTTCCC GTCCCTATCT CTCAGCGCCT GTGGCGGCGC ACGCGCGAGT GAGTCCGCTT
CCGGCATTGC GTGCGCGTCA GATCGGTACC GCGGCCGCGC TCACGACGAC ACCGACGGCC
GCGTACGGGA CGGTGCCCAA GGGCACCCGC ACTGTGGAAA CCGACAACCT CTACGATCCC
AACCTCGCCC ACGGTGGCCG GACGATCGCC TCATGGGCCA AGAGCCCGGT GTACAGCCAG
ACTCCCGCGC AGCCGGACAC GACACCGTCG CTGTGTACGG TACCCAGCTA TGCCACGGAT
TCGGCGAAAC CCTGGATAAC GGGCTACACC GATCAGATCA TGACGTTCAG AGCTGCCACC
CCGTGTTGGG ATTCCTCCAA CAACGTCGCT TCGACGACGG CGGCGACCGC TGTGTCTGGC
ACTCAGAGCT TCTACGACAA TGACGCAGGC GCGAACCCCA CCACGGTGTC GACGGGCGAT
ATCACTGTGG CGAAGGTCTT GGATTCCTTC AGCGGTTCGA CTCCTGTGTT CGTGACCAAG
TCCAGCAGCG GCTATGACGG CTACGGCCGA GTCATCCTGA GCCGCGATGC GCTGAACCGA
GCGGCCAAGA CCGACTATTA CTCGGCCGCA GCTGGGGAAC TGCCGAACAA GACCGTGGGG
ACCAATCCCA TGGGTTGGAC AAGTACCACG CTGATCGACC CCACACGGTC TGTGCCCACG
GACACGACCG ACGCCAACGG CAAGACGGTG CACGAGACGT ACGACAGCTT GGGGCGCTTG
ACCGCGGAAT GGAACATCGA CAATCCGTAC ACGCCTACCA ACACGCCGCC AGCGAACTCC
GTCTTCAAAT ACACCGTCAA CACCGCGACG CCGTCCGTCA CCGAGACCGA CAAGTTGCGC
TCTGACGGTA CCTACACGGC GGGTTTCACC CTGGAGGACT CCCTCGGCCG CACCATCCAG
ACACAGTCGA GCCCGGTCAA CGACGTCTCG GGGCGGGTCG TCACAGCGAC CACGTACGAC
TCGCTCGGGC ACGCGGCCAG CGTCACAGGT CCGGAATACG ACTCGGCGAA CGCTCCCTCG
GGAAAGCCTT GGGCGGCAGT GTCGGGTTCC CATCCGTTGC GAGCCACCAC CACGCTCTAT
GACGGCATGA GCCGACCGAC AGTGGTAACG ACGTACTCGG CAGCCAACGC CGTCACGCAT
TCGGTCACGT CCTATCCCGG CGCCGACCGG ACCGACGTCA CACCGCCGAT CGCGGGCGCG
GTGCCGATAA CCGGGCCGGA CAACCAGCCG ACGTCTGGAA CCAAGGCGTC CACGCTCACC
GATGCGCGCG GGAACACCAC AGCGCTGTAC ACGTACAAGG GCCTGGACCC GGCCGCCTTC
CCGTTTGGTA CCGCCTCGGC CGCCGACGTC ACGAGCTACT CCTATGACGC AGCTGGGAAC
CAGACCCAGG TCAAGGACGC GCTCGGCAAT ACCTGGACCT ACACCTTCAA CCTGCAAGGC
CAGAAGACGA CCGCCGATGA CCCCGACACC GGGGTCACGA CCTACGGCAC GCCGGCCAAC
GGTGCGAACC CCTACGCCAG CGGCTACGAC GCGGTAGGCA ATCTTGTCCA GGTCCAGGAC
GGTCGCGGAA AGGCGTTGCA CTACTCCTAC GACGCGCTGA ACCGTAAGAC AGCCGAGTAC
TCGGGAACTT CGACCTCGGG GACGCAACTT GCACAGTGGG ATTTCGACAG TCTGGCAAAG
GGTCAGCCCA CCGACAGCAA GCGGTTCACC ACGGGTGCCG GTCAGCCGTA CGTCAACGCG
GTCGCGGGGT ACGACGCGGG CTACCGCCCC ACAGGGCAGT CGGTCACCAT TCCGTCCGGG
GACGGCAATA ACACCTTGGC GGGTACATAC ACCACGGGCC TCACGTACAC CCCGATCACC
GGCCAGCTGT ACCAGACGAC CCTGCCGACC CTGCCGACCG GCGACGACCT GCAGCCTGAC
GTCGTCACGA ACGGATACAA CGACAACGGA TTGCTGACCA GTACCGGCGA CTACTTCGCC
GACCTGCTCA CGGACTCCTC GTACACGGAG TACGGCGAAG TCCAGCGCCG GCTGCTCGGC
GACTATCCGA ACCAGGTCGC CGCCGACACC GTCTACGACC AGGCGACGCG CCGCGTCGGC
AACTACACAG TCAGCGCTCT GGCCTGGAAC CGGCCGATCG ACACCACCGC CTACACGTAC
AACACGGCGG GGCAGATCAC CTCGGAGACC GACCTCCAGG GCAACGCGAC CAGCTACAAC
AGCTCCACGG GCTTGGTCTC GGCCAGCGCT GCCCAGGATG TTCAGTGCTA CGCGTACGAC
TACGCGGGCC GGCTGTCTGC GGCATGGACT GACAACAAGA TCGCCAACGG CACCGTCTTC
GGCACAGTGA ACGGCGTCCA GGACACCTTC GCCGCGCAGC CGCCGGATGG CGCGTTCGGC
AGCTGCGTCG ATCCCCAGCC CTCCACGAGC AACCGCGCGG CGGCCAGCGC CCAACTCACA
GGCGCGGGCG CTTCCCCGGC GGCGTACTGG CAGACCTACA GCATCGACGC GGTCGGTGAC
CGCAAATCGG AGACCGACTA CAGCCTCGGT ACCGACCCCA GCCAGGACAC CACCAATACC
TACACCTACC CCGCAGCGGG TACCCGCGCT CCCGGCAGCG GACCCCACAC TCTGAGCCAG
GTGACCCACA CAACGGGCAC CAGTCCCAGC ATCAGCGACA CCTACACGTA TGACAACAGC
GGCAACCTGA AGACGCATGC AATCAGCAAC CAGCCGACCA AGAACCAGTC CCTGGCCTTC
GACGCCGAAG GCCACCTGTC CACGGACACG GACACCGCAG GCGACAGCGC CTCCTACACC
TACGACGCCG ACGGCACCCA GCTGATCCGC CGTGACGCCA CCGGCGCGAC GCTGTACCTG
AGCGGCACCG AGCTGCACAT GGACACCAGC GGCGTCGTGA CGGGCCAGCG GTACTTCAGC
TACCCTGGCG CCCCGACCAT CGTGGAATCC GGCGGCAGCG CACCGGTCAT CAGCTACGAG
GCCGGCAACC AGCAGGGCAC TGCGACCACC GCCATCGCCG CCGGCACCGG CACCCCCGGA
TCGCCCGCGA CACCGGACAA GAGCGTCATC GCCCGGCGCG CCTACACACC GTTCAACACC
CCTCGCGGTA CGGCGAACAC CACCAACAGC TGGGGTCTGA GCTTCCCGGA CGACCACACC
TTCCTCGGCG CCAGCACGGA TGCCTCCACC GGCCTCGTCG ACATCGGAGC ACGCAAGTAC
GACCCGTCGA CCGGCCGCTT CATCTCCGCG GACCCCCTTC TCCAGGAGGA CTCGCCACAG
ACCATCGGCG GCTACGCCTA CGCCGGAAAC GACCCGGTCG ACGGAAGCGA CCCCACCGGG
CTGCAAATGA AGGCAGCCAT CTACGGCGAC GGAGGCACCA CCCCGGTCGT CAACGGCCAG
CAGATGCTCT CGATCTCACC ACACGTCTCC GTGAGCGCGA ACAGCAAGAG CTTCCTCCAT
CTGTACGAGG CCTACGCCAA AGGCATGGAG TGGACGTACA GCCACGGAAG CTACAAGGAC
GCGAGATCCC AGGAAGCGGC CGCATGGAAC GCCGGCTGCT CCCGCATCAA CGATTGCACG
TTCAACGGCC TGACCACGGC CATCGGAAAC CTCGACGACA CGACCCCGAC CAACCGCAAG
GCCACTCCGA TCCAAGGCAT CGACGTCGTC GGCATAGGCC CGGAGGAGCA CGTGCTCGAA
ATGTCCGGCG ACGGCACCGT GAGCGACTAC ACGTCACTGA CGCACGGCGA ACTGGGCTCT
GGTGCGCTCG AGCTGGGGGT CCGGGCCGGC GGCCTCGCCA TGAATCTGGC CTCCGCGATG
ACTCAGCAGT TCTGCCACTC GTTCGCCGCC GATACCGAAG TGCTGATGGC CGACGGCACC
GACAAGGCCA TTCAGGACGT CGCCGTGGGC GACGAGATCA AGAACGCCCA GCCCGACGGC
CCGAACGAAA AGCACCGCGT CGACGAAATC CACAAGACAC TGACCGACAC GGACTTCACC
GACCTGACCG TCAGCACCCC CACTGGTCCC CGAACCATCA CCGGCACCCA GAACCACCCG
TACTGGGACG CGACGACCGG GAAGTTCACA ATCGCCTCCC AACTCAAGCC AGGCGATCAC
CTTCAGACCG ATGATGCTGG CGCCGTCACG GTGCTTACGG TCCGCGACTA CGTCTCATCG
ATGGTGACGT ATGACCTCAC CATCGACGGG CTGCACACGT ACTATGTGGT CGCAGGCGAC
ACGCCGGTGC TGGTGCACAA CTGCGGAGGC TGGCTTGACG GCCATGAGTC GAATTGTGTC
TGTGACGGAA CCGGCGGGGA CCCAGTGTAC CCGGACGGTC CAAGTTCTGC CGATGTTGAT
GAGGCATACG CGCAGCGCTC GGATGAACAA GATGAAAAGG AGCCAACTGC TGCAGAGGTG
GCACAGAGCA TCGCGAACGG TCACGCCGGG GGAAAGCACG CGGGTGACTT CCCTGGAATG
ACAGTCGACG ATCTTGCGAG TCATACTGAA TCGGTCCTCG ACAACGCGGC TATGACGAAG
CCGTTGAGTA AGGGCAGAAT TGCCTTCTCG GACGGTATCT CGGTCGTCTT GTACGATCCG
AACACCGACG ATAAGGGAAC AATATTTACG CCGGATGACT TCGACGAATA TTGGAAGGGT
TTGAGTTAG
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| Protein sequence | MRRRRLMAAA VVTALTIGVV SGLPHSADQA QAAGKTKTAK YNGKSVVTDT PIKTGPWHGK
NPPAPPPAKG SIPSQTTFPA AAQADLTLTA PTASGARTSA SADTVSNVPY ASAAGVPVAV
AADPADSQNL ASSDQLPSRV KAGTAASIPT TVHVTVTDHA TAVAAGVSGE IVSVSRTDGK
TGAADAAVAL DYSSFGQAYG GDYASRLDLV ALPPCALTTP KVAACQKETP LRFANDATHQ
RLTASVTIPG GTHPSVSTKS DGKSAAPGGT LVLAATATGS GSAGSYNATS LSASNSWSES
SNTGNFTYSY PISVPPAIGG AAPTVALSYD SGAVDGHSTV ENGQSSWIGD GWDYSPGYVE
RSYVPCSKAK PTSWSTSTDN CFALDANGNP VPALTLSYGS HGGQLVHDDG DTTNTHFKLQ
QDDGTQIDLL PNTATTTATS EMFRMRMPDG TTAYFGADTV PAELNNGVAV KPFGATNSTW
FEPVFNNPAA NSVCKDPTKA TAANCETAWR WNLDFVVDPH GNVQQVFYNA DLNAYGRGTA
QTAATYVRGG TPKEIDYGWQ LSDAIAGRQP GAKVYFGSVQ RCVDPALDGG YGASSGGSAG
CQSAPITSAN LPGFQDTPYD LYCPTTNATC IEAAQNSPTF WSTMRLATIV TEVRENNAWH
SVDQYNLFDQ FNLAGDQNNS FNRPPLWLAA IRHCAAGNVD THQICLPASG AGSLSVPDVT
FAGSGAQMAN RVPGVTGSGG TNLGLTPIDR ARLVTITDEL GAQTTITYDV PSAFALGCTA
PPSGPADWHN TKLCYPEYWT PPGEPSPITD WFHKYVVTGI TTKDDSGTGA SLATSYTYDT
TTGAAWHSND SELVTDPKAR TYDQYRGFAS VTTTQGDGSD TPAGQTTTTY LRGMDWDPDI
KAVAAGVDCP NTAAGITQAE CPRVSVRDSQ GGSTTDDVIF NGEALETQTF TAANGSVWND
TVSRPYLSAP VAAHARVSPL PALRARQIGT AAALTTTPTA AYGTVPKGTR TVETDNLYDP
NLAHGGRTIA SWAKSPVYSQ TPAQPDTTPS LCTVPSYATD SAKPWITGYT DQIMTFRAAT
PCWDSSNNVA STTAATAVSG TQSFYDNDAG ANPTTVSTGD ITVAKVLDSF SGSTPVFVTK
SSSGYDGYGR VILSRDALNR AAKTDYYSAA AGELPNKTVG TNPMGWTSTT LIDPTRSVPT
DTTDANGKTV HETYDSLGRL TAEWNIDNPY TPTNTPPANS VFKYTVNTAT PSVTETDKLR
SDGTYTAGFT LEDSLGRTIQ TQSSPVNDVS GRVVTATTYD SLGHAASVTG PEYDSANAPS
GKPWAAVSGS HPLRATTTLY DGMSRPTVVT TYSAANAVTH SVTSYPGADR TDVTPPIAGA
VPITGPDNQP TSGTKASTLT DARGNTTALY TYKGLDPAAF PFGTASAADV TSYSYDAAGN
QTQVKDALGN TWTYTFNLQG QKTTADDPDT GVTTYGTPAN GANPYASGYD AVGNLVQVQD
GRGKALHYSY DALNRKTAEY SGTSTSGTQL AQWDFDSLAK GQPTDSKRFT TGAGQPYVNA
VAGYDAGYRP TGQSVTIPSG DGNNTLAGTY TTGLTYTPIT GQLYQTTLPT LPTGDDLQPD
VVTNGYNDNG LLTSTGDYFA DLLTDSSYTE YGEVQRRLLG DYPNQVAADT VYDQATRRVG
NYTVSALAWN RPIDTTAYTY NTAGQITSET DLQGNATSYN SSTGLVSASA AQDVQCYAYD
YAGRLSAAWT DNKIANGTVF GTVNGVQDTF AAQPPDGAFG SCVDPQPSTS NRAAASAQLT
GAGASPAAYW QTYSIDAVGD RKSETDYSLG TDPSQDTTNT YTYPAAGTRA PGSGPHTLSQ
VTHTTGTSPS ISDTYTYDNS GNLKTHAISN QPTKNQSLAF DAEGHLSTDT DTAGDSASYT
YDADGTQLIR RDATGATLYL SGTELHMDTS GVVTGQRYFS YPGAPTIVES GGSAPVISYE
AGNQQGTATT AIAAGTGTPG SPATPDKSVI ARRAYTPFNT PRGTANTTNS WGLSFPDDHT
FLGASTDAST GLVDIGARKY DPSTGRFISA DPLLQEDSPQ TIGGYAYAGN DPVDGSDPTG
LQMKAAIYGD GGTTPVVNGQ QMLSISPHVS VSANSKSFLH LYEAYAKGME WTYSHGSYKD
ARSQEAAAWN AGCSRINDCT FNGLTTAIGN LDDTTPTNRK ATPIQGIDVV GIGPEEHVLE
MSGDGTVSDY TSLTHGELGS GALELGVRAG GLAMNLASAM TQQFCHSFAA DTEVLMADGT
DKAIQDVAVG DEIKNAQPDG PNEKHRVDEI HKTLTDTDFT DLTVSTPTGP RTITGTQNHP
YWDATTGKFT IASQLKPGDH LQTDDAGAVT VLTVRDYVSS MVTYDLTIDG LHTYYVVAGD
TPVLVHNCGG WLDGHESNCV CDGTGGDPVY PDGPSSADVD EAYAQRSDEQ DEKEPTAAEV
AQSIANGHAG GKHAGDFPGM TVDDLASHTE SVLDNAAMTK PLSKGRIAFS DGISVVLYDP
NTDDKGTIFT PDDFDEYWKG LS
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