Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3159 |
Symbol | |
ID | 8334512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3473843 |
End bp | 3474847 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644956306 |
Product | RNA polymerase factor sigma-70 |
Protein accession | YP_003113909 |
Protein GI | 256392345 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0587569 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0845984 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACCA AAGCGATGAC CTTGACGCAA CGTGCCAGAT CCGGCGACGG CGCGGCGTTC GACGAGCTCG TCGCCCCCTA CCGCCGTGAA CTCCAGGTGC ACTGCTACCG CATGCTGGGC TCGTTCCAGG ACGCCGAGGA CGCGCTCCAG GACACGCTTC TCAGCGCCTG GCAAGGACTG AGCGGCTTCG AGGAACGCTC CTCGGTCCGC ACCTGGCTCT ACCGCATCGC CACCAACCGC TGCCTGAACG CCCGCCGCTC GGCGAGCCGC CGCAGCGCCA AGGAATGGAA CGTCCCGGGC GTCGAGCCGC CGGCGCCGAC CAGGCTCGGC GAGGTGTTCT GGCTGGAGCC CTTCCCCGAC GCCCTGCTCG AGGGCGTTCT CGACGCCTCA CCACCCGGTC CCGAGGCGCG CTACGAGCAG AGCGAGGCGA TCTCGCTGGC CTTCGTGACC GCGCTACAGG TGCTGCCGCC GCGACAGGTG GCGGTGCTGC TCCTACGCGA CGTTCTCGGA TACCACGGCG CCGAGGTCGC GGAGATGCTC GACACGACAG CGGAATCGGT GAGCAGCGCC CTGAAGCGAG CCCGCGCCGG CCTCGAGCGC CAGCGCTCTG CCAGCGCCCC AACCTCCGGC TCCTCCGAAG AAAGCGCACT CGCCGCCAAG TTCGCCACCG CCTACGAAGC CGCCGACATC GAAACCCTGA TCGCCCTCCT GACCGACGAC GTCTTCACCT CGATGCCCCC CATGCCCTTC GAGTACCAAG GCCGCGACGC CACCATCACC TTCCTCACCA GCATCCTGGC CACCGGCCGC CGCCACCGCC TGATCCCCAC CCGAGCCAAC AACCAACCCG CCTTCGGCGC CTACCTCCGC GGCACCGGCG CCACCAGCCA CGGCGTAGGC CTCTTCGTCC TCGAAACCAC CACCACCGGC ATCAGCGCCA TGACCCGCTT CGAGAACGGC GTCCTGCCCT GGTTCGGCCT GCCGCGCTCG ATCCCGGCGG CTTAG
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Protein sequence | MATKAMTLTQ RARSGDGAAF DELVAPYRRE LQVHCYRMLG SFQDAEDALQ DTLLSAWQGL SGFEERSSVR TWLYRIATNR CLNARRSASR RSAKEWNVPG VEPPAPTRLG EVFWLEPFPD ALLEGVLDAS PPGPEARYEQ SEAISLAFVT ALQVLPPRQV AVLLLRDVLG YHGAEVAEML DTTAESVSSA LKRARAGLER QRSASAPTSG SSEESALAAK FATAYEAADI ETLIALLTDD VFTSMPPMPF EYQGRDATIT FLTSILATGR RHRLIPTRAN NQPAFGAYLR GTGATSHGVG LFVLETTTTG ISAMTRFENG VLPWFGLPRS IPAA
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