| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3100 |
|---|
| Symbol | |
|---|
| ID | 8334452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3406623 |
|---|
| End bp | 3408104 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644956247 |
|---|
| Product | Fmu (Sun) domain protein |
|---|
| Protein accession | YP_003113850 |
|---|
| Protein GI | 256392286 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.831466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACCGC GCACGTCCAC CTCCACCGCC GATCAGGCCC GCGCCGCCGC GCTCGAAGTC
CTGGAGGCGG TGCGCACCCG GGACGCCTAC GCGAACCTCC TGCTGCCCCG GCTGCTGCGC
GACCGCGGCC TGAGCGGCCG GGACGCCGCC TTCACCACCG AGCTGTCCTA CGGCACGCTG
CGCGGTCTCG GGACCTATGA CGCGATCATC GCCGCGTGCG TGGACCGCGA TCTGGACGCC
GTCGACCCGG TGGTGCTTGA CGCGCTGCGG ATCGGCGCGC ACCAACTCCT GGCGATGGAC
GTCCCGCCGC ACGCCGCGGT GTCGACCACC GTGGACCTGG TCCGGTCGGT CTCCAACGAG
GGCGCCTCGC GGTTCGCCAA CGCGATCCTG CGCCGCGTCG GGCAGGGCGA CCTACAGGAG
TGGATCAAGC GGATCGCGCC GAACGCGCAG GACGATCCGG AGGGCTTCCT GTCGGTGTCG
CGCTCGCACC CGCGCTGGAT CGTCTCAGCG TTCTGGGACT CGCTGCAGGC GCACCGCGGC
GCGCAGCGCG CGCACCAGGA CATCGGCGAG CTGCTGGACG CCGACAACGC GCGGCCCGGC
GTCACGCTGG TCACGCGGCC GGGCTTGGCG CAGGTCGGGG AGCTCACTGA CTTGGGCGCG
CTGGCTGCGC GGTACTCGCC GTACGCCGCC TACCTGGCCG GCGGCGATCC GGGCGCCTTG
GCGCCGGTCC GCGACGGCCG CGCCGGAGTG CAGGACGAGG GCAGCCAGCT GGTCGCCACC
GCGCTGGCCC TGGCGCCGCT GGAGGGCCGG GACGAGCAGT GGCTCGACAT GTGCGCCGGT
CCCGGCGGGA AGGCCGCGCT GCTGGCCGGG CTGGCGTTGG AGCGCGGGGC GTCGCTGCTG
GCGAACGAGA TCGCGCCGCA CCGGGCCGAG CTGGTCCGCA GGGCTCTGCG GGGGTACGGG
GACCGAGTGG TCGGGACTGC TGACACTCAC ACGGCTGAGG TGGATGAGAA CGCCGATGCT
GATACGGACA CTGACGCCAC TGACGCCGTG CGCACCGGCA GCCTCCAAGT CATCGCCGCC
GACGGCATCC GCGCGCCCTG GCAGCCCGGC TCCTTCGACC GCGTCATGCT CGACGCCCCC
TGCACCGGCC TCGGCGCGCT GCGCCGGCGT CCGGAGTCGC GCTGGCGCCG CACTCCGGAG
GACCTGGAGC GGCTGACCCG CGTCCAGCGT CGCCTGCTGT CCTCGGCGCT GGACTCCGTG
CGGACCGGCG GACTGGTCGC CTACGTGACG TGCTCCCCGC ACCTGGAGGA GACCCGCGAC
GTGGTCCGTC AGGTGGTGAA GGCGCGGCGC GACGTCGAGC GCGTGGACGC CCGGCCGTTG
CTGCCCGGCG TGCCCGACCT CGGCGGCGGA CCCGATGTCC AGCTCTGGCC GCATCTGCAC
GGTACCGACG CCATGTATCT GGCGCTCCTG CGCCGTTCCT AA
|
|---|
| Protein sequence | MAPRTSTSTA DQARAAALEV LEAVRTRDAY ANLLLPRLLR DRGLSGRDAA FTTELSYGTL
RGLGTYDAII AACVDRDLDA VDPVVLDALR IGAHQLLAMD VPPHAAVSTT VDLVRSVSNE
GASRFANAIL RRVGQGDLQE WIKRIAPNAQ DDPEGFLSVS RSHPRWIVSA FWDSLQAHRG
AQRAHQDIGE LLDADNARPG VTLVTRPGLA QVGELTDLGA LAARYSPYAA YLAGGDPGAL
APVRDGRAGV QDEGSQLVAT ALALAPLEGR DEQWLDMCAG PGGKAALLAG LALERGASLL
ANEIAPHRAE LVRRALRGYG DRVVGTADTH TAEVDENADA DTDTDATDAV RTGSLQVIAA
DGIRAPWQPG SFDRVMLDAP CTGLGALRRR PESRWRRTPE DLERLTRVQR RLLSSALDSV
RTGGLVAYVT CSPHLEETRD VVRQVVKARR DVERVDARPL LPGVPDLGGG PDVQLWPHLH
GTDAMYLALL RRS
|
|---|
| |