Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_2952 |
Symbol | |
ID | 8334302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3310444 |
End bp | 3311268 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644956097 |
Product | Ku protein |
Protein accession | YP_003113702 |
Protein GI | 256392138 |
COG category | [S] Function unknown |
COG ID | [COG1273] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02772] Ku protein, prokaryotic |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0023428 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.000343004 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCGTCAG CCGTGTGGTC CGGGACGATC TCGTTCGGCT TGGTCAGCGT GCCCGTGCAG CTGTACTCCG TTACCGACAG CGCCGGACCC GAACTGCACC AGTACCACGC CGAGGACGGC GGCCGGATCC GGTACAAGCG GGTGTGCGAA GTCGACGGCC AAGAGCTGCA GCAGGACGAC ATTGCCCGCG GCTACCCCGT CGGCGACGAC GAAGTGATCA TCACCGACCG GGACCTCGAC GGCTTGCCCG AGGTCGCGAA GAAGATCGTC GCCATCGATG CGATCGTCCG CGAAGACCAG ATCGACCCGA TCCAGTACCG GAAGGCCTAT TACGTTGCGC CGGAGAAGGC GGGACTCCGC CCCTACGTAC TGCTGCGCAA TGCGCTTGCG AAGGCTGGAC GCGCCGCGGT TGTTACCTTT GCGATGCGCG AGCGCGAGTC CCTAGCGCTG GTGCGGGCCC GCGACGACCT GCTGCTGCTC GAGACGCTGT TCTGGCCCGA TGAAGTGCGT GAGATCCCCG TGGAGGCTCC GCCGGCCATC GACGACAAGA CCGAGCTGAA AGCGGCCGTG GACCTGATCG AAGCCATGAC CTCTGACTTC AAGCCCGAGC AGTACCACAA CCTGTACCGC GAGGCGCTCC AAGAGGTCAT CGAGGCCAAG GAAGCCGGGC GCGAGGTGAC GCGCGTTGAG CAGCCGAAGG AAGACGCGGG TGCGAAGGTC ACGGACCTGC TGTCGGCACT GCGGGCATCG GTGGAGCGGG CGAAGGAGAC GCGCGGCGAG GGCGAGAAGC CGGCTGCGAA GAAGAGGGCG AAGAAGGCGG CCTGA
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Protein sequence | MPSAVWSGTI SFGLVSVPVQ LYSVTDSAGP ELHQYHAEDG GRIRYKRVCE VDGQELQQDD IARGYPVGDD EVIITDRDLD GLPEVAKKIV AIDAIVREDQ IDPIQYRKAY YVAPEKAGLR PYVLLRNALA KAGRAAVVTF AMRERESLAL VRARDDLLLL ETLFWPDEVR EIPVEAPPAI DDKTELKAAV DLIEAMTSDF KPEQYHNLYR EALQEVIEAK EAGREVTRVE QPKEDAGAKV TDLLSALRAS VERAKETRGE GEKPAAKKRA KKAA
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