Gene Caci_2781 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2781 
Symbol 
ID8334130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3192128 
End bp3193735 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content71% 
IMG OID644955929 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003113535 
Protein GI256391971 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACA ATGGACTGAT ATCGCCGACT CCGCCTCGCC GGGCGGGTCG CAAGGAGTGG 
ATCGGGTTGG CGGTGCTGGT TCTTCCGTGC CTGCTGATCT CGATGGACAT GTCGGTGTTG
TTGTTCGGGC TGCCGTTTAT CAGCGCGTCG CTGAAGCCCA GCGCTACACA GCAGCTGTGG
ATCATGGACG CGTACGGTTT CGCCCTGGCG GGGGTGCTGA TCACGATGGG GGCGGTCGGT
GACCGGATCG GCCGTCGCCG ACTGCTGTTG GCGGGTACCG CGGCCTTCGG CGGGGCGTCG
GCCGTCGCCG CCTACGCTGG CAGCGCGGAT CTGCTGATCG CCAGCCGGGC GCTGCTCGGC
CTGGCCGGCG CCACGCTGAT GCCCTCGACG ATGGCCCTGA TCCGCAACAT GTTCCACGAC
GAGAAGCAGC GCAACAGCGC GATCGGCCTG TGGACCGGGG GAATCGTCGG CGGCGCCACC
CTGGGCCCGG TCGTCGGCGG TCTGCTGTTG GACCACTTCT GGTGGGGCTC GGTCTTCCTG
ATCAACCTGC CGGCCATGGC CCTGCTGCTG GTCCTCGGGC CGATCCTGCT GCCGGAGTTC
AAGATGCCGG CCGACGGCCG CCGCTTCGAC TATGCCGGCT CGGTGCTGTC CATCGCCGCG
GTTCTGCCAA CCGTGTACGG GGTCAAGCAG CTCGCGGTCG ACGGGTACAG CGCCGGCGCG
CTGGCCGCCG TCGCCCTCGG GATCGCCTTG GGCATCGCGT TCCTGATCCG GCAGCGCACC
GCCGCCGATC CGCTGATCGA CACCGCCTTG TTCGGCACCA CGGCCTTCCG CGTACCAGTG
CTGGTCAACG CGCTCGGCAA CTTCGTCATG ATCGGATTCA GCCTCTACAA CACGCAGTAC
CTGCAGTCGG TGGCCGGGAT GCGGCCGTTC ACCGCGGCGC TGTGGTCGCT GGCCGTGCTC
CCGGCCGTCA GCGTCGGCAT GGCCGTCACC GGAACGCTGA CGACGAGAAT CCGCCCGGCG
ACGCTCATCG GCGGCGGCTT CCTGATCGCC GCCGCCGGGG CGGCCGTCCT GCTGCTGGTC
CGCCCCGGCA ACCCGGTGGC CGTGCTGCTG ATCGGCGCGG GCGCGGTGGC CTGCGGCATG
GTCGCGGCCC AGACCATCGC CGGCACCATG GTCATGACCG CCGCCTCGGC CGAACGCGCC
GGCTCCGCGT CGGCGCTGAA CGAGACCGGC TCCGAACTCG GCAGCGCCCT GGGCATGGCC
CTGCTCGGCA GCATCGGCGC CGCCGTCTAC CACCACAAGA TGAGCGGGCA GACCCCGGCC
GGTATACCCG CCGACGCGAT CGCCCAGAGC CACCAGACCC TGGGCAGCGC CGTGGCCGTC
GCGGACCAGT ACCCCGGCCC GGTGAGCCGG CACCTGCTCG GTGCCGCCCG CGACGCCTAC
ACCGTCGGCT TCCACGTCGC CGCCGTCACC GGCGCGGTCC TGCTGACCCT CACCGGCCTG
TACGTGATGA GCGTCCTGCG CCACGAGCCG CCGCTGCCGG CCGCTCCCGA GAAGGAGAAG
GCGCCCAAGC ACGCCGGGCA GCGGAGCGAG GAGCCCATCT CGGTCTGA
 
Protein sequence
MIDNGLISPT PPRRAGRKEW IGLAVLVLPC LLISMDMSVL LFGLPFISAS LKPSATQQLW 
IMDAYGFALA GVLITMGAVG DRIGRRRLLL AGTAAFGGAS AVAAYAGSAD LLIASRALLG
LAGATLMPST MALIRNMFHD EKQRNSAIGL WTGGIVGGAT LGPVVGGLLL DHFWWGSVFL
INLPAMALLL VLGPILLPEF KMPADGRRFD YAGSVLSIAA VLPTVYGVKQ LAVDGYSAGA
LAAVALGIAL GIAFLIRQRT AADPLIDTAL FGTTAFRVPV LVNALGNFVM IGFSLYNTQY
LQSVAGMRPF TAALWSLAVL PAVSVGMAVT GTLTTRIRPA TLIGGGFLIA AAGAAVLLLV
RPGNPVAVLL IGAGAVACGM VAAQTIAGTM VMTAASAERA GSASALNETG SELGSALGMA
LLGSIGAAVY HHKMSGQTPA GIPADAIAQS HQTLGSAVAV ADQYPGPVSR HLLGAARDAY
TVGFHVAAVT GAVLLTLTGL YVMSVLRHEP PLPAAPEKEK APKHAGQRSE EPISV