| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2389 |
|---|
| Symbol | |
|---|
| ID | 8333738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2709120 |
|---|
| End bp | 2709620 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644955542 |
|---|
| Product | Shikimate kinase |
|---|
| Protein accession | YP_003113148 |
|---|
| Protein GI | 256391584 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCGG TCGTCGTCCT GGTCGGGGCT CCGGGCTCCG GCAAGTCCAC CGTCGGCCGC
CTGGTGGCCG AGCAGCTCGG CGTCGGGTTC CGGGACTCCG ACGAGGACAT CGAGACCGCC
GCCGGGCAGC AGATCGCCGA GATCTTCGTC GACCACGGCG AGCCGCACTT CCGCGCGCTG
GAGAAGAGCG CCGTCAAGGA GGCTCTCGCC TCCCACGACG GCGTCCTCGC CCTCGGCGGC
GGCGCCGTCC TCGACGCCGA CACCAGGATC CTGCTCAAGG AGCACCGGGT CGCCTTCCTG
GAGGTGACGC TGGCCGACGC CGCGTCCCGG GTCGGCCTCA ACCGCGACCG CCCGCTGCTG
CTGGGCAACG TGCGCGGCAC GCTGCTCAAG CTCATGGACG AGCGGCGTCC TCTGTATGAG
GAAGTCGCCG TCCTGACCGT CCGTACCGAC CGCGCGCCCG AAGAGGTCGC GGCTGAGATC
GTCGAAAGCC TGGGGAAGTG A
|
|---|
| Protein sequence | MSPVVVLVGA PGSGKSTVGR LVAEQLGVGF RDSDEDIETA AGQQIAEIFV DHGEPHFRAL
EKSAVKEALA SHDGVLALGG GAVLDADTRI LLKEHRVAFL EVTLADAASR VGLNRDRPLL
LGNVRGTLLK LMDERRPLYE EVAVLTVRTD RAPEEVAAEI VESLGK
|
|---|
| |