Gene Caci_2237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2237 
Symbol 
ID8333586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2538393 
End bp2539037 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content71% 
IMG OID644955390 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003112996 
Protein GI256391432 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00985462 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000967235 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGCAGA CTGACCAAGC CCTTGCGCCG GCGCCGGCTC CAACCGGCCT GCGGGAGCGT 
AAGAAGGCCC GGACGCGTGC CGCGATCCAG CGGCACGCTC TGCGCCTCTT CCGCGAGGCC
GGCTACAGCG CCACCACCAT GGAGCAGATC GCCGCCGCGG CCGACGTGTC CCCAAGCACG
CTCTACCGCT ACTTCCCGAC CAAGGAGGAC CTGATCCTCC AGGACGACTA CGACCCGCTG
CTCGAGGCGG CGTTCCGCGC CCAGCCCCCA GACCTGCCGA TCCTCGAAGC CTTCCGCACC
GCCGTGAACG AGGCCATGAG CCAGGTCCCC CCCACGGACC AGGCCGAGGC CCTGGAGCGC
GCCCGCATGG CCTACACCAT CCCCGAGGTC CGCGCCCGCG CCCTGGACCA CATGTTCACC
ACCACCGACA TGATCGCCAC CCTGTTCGCC GAGCGCCTGA ACCGCACCTC CGACGACCTG
GAGGTCCGAG TCCTGGCCGG CACCGTCATA GGCGCCGTGA TGGCCGCGCA ACAGCGCTGG
ATCTCCGACC CGGACGCGGA CATGTTCGGC GTCCTGGACC GCGCCCTGCA GTTCCTCATC
GACGGCCCGG GCCACCTCGG CAACCGGCCC GCGCAAGGAG CCTGA
 
Protein sequence
MPQTDQALAP APAPTGLRER KKARTRAAIQ RHALRLFREA GYSATTMEQI AAAADVSPST 
LYRYFPTKED LILQDDYDPL LEAAFRAQPP DLPILEAFRT AVNEAMSQVP PTDQAEALER
ARMAYTIPEV RARALDHMFT TTDMIATLFA ERLNRTSDDL EVRVLAGTVI GAVMAAQQRW
ISDPDADMFG VLDRALQFLI DGPGHLGNRP AQGA