Gene Caci_2100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2100 
Symbol 
ID8333445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2383508 
End bp2384689 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content68% 
IMG OID644955250 
Productcell envelope-related transcriptional attenuator 
Protein accessionYP_003112860 
Protein GI256391296 
COG category[K] Transcription 
COG ID[COG1316] Transcriptional regulator 
TIGRFAM ID[TIGR00350] cell envelope-related function transcriptional attenuator common domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGTG GATATGGTGG TTGGACCCCG CAGGAGCCTG GTGGCTGGAT TCCGCCGGAG 
CCCGAGCCCA CCGTCGAGCT GCGGCCGCCG TCCAGGTGGG CTCAGCTGCG GGGGAGGTTG
TCCGGGGGAC GGCGGGACGG GGGTGGTCCA CGTCCGCCGC GGGTGCGCCG GTTCAGCTGG
CCGAAGCGGA TTCTGGCCGG CGGGCTGGTA CTGGTGTTGC TGGTCGGGGG TTACGCGACG
TGGTTGTACT TCCACGCCTC CGGGGAGATC CGGCACGAGA ATGTGATCTC CGACTACCCG
GGCCGTCCGG CCGAGGGCAA GGGGACGAAC TGGCTGCTGG TCGGCAGTGA CAGCCGGGAG
GGGCTGACCT CGGACCAGGA GGACGCGCTG CACACCGGGA CCGGGGCGGT GACCGGGAAC
ACCTCGCGGA CCGACTCGAT GATGATCCTG CACTCCGGGT CGAACGGGAC CTCGCTGATC
AGCCTGCCGC GCGACTCCTA CGTCACCATC CCGGCCTGGA CCGACAGCAA GGGCAAGCAG
CACGCGCTGT CGAAGAACAA GCTCAACGCC GCCTACGCCT TCGGCGACGC CCCGCTGCTG
ATCAAGACCA TAGAGGTCAG CACCGGGGTG CGCATCGACC ACTTCGCCGA GGTCGGCTTC
GGCGGCTTCG TGAAGGTCAC CGACGCCGTC GGCGGCGTGC ACCTGTGCCT GGACAAGCCG
CTGAAGGACG AGCTGTCCGG CGCGGACCTG AAGGCCGGCT GCCAGACCCT CAACGGCGCC
CAGGGGCTGG CCTACGTGCG CGACCGCTAC TCCGACCCGC TCGGCGACAT CGGCCGGATG
CAGCGCCAGC GCACCTTCCT GGCGGCGCTG GCCCACAAGG TGTCCTCCAC GGGCGTGATC
CTGAACCCGT TCAAGCTGGT CCCGGTCCTG GACAACTCGC TGGCCGCGTT CAAGGTCGAC
AACGGCACGA ACCTGAGCGA CCTCTACGAC ATGTTCCAGC ACATGAAGGG CGTCAGCGGC
AGCAACGGCC ACACCATCGT GGTGCCGATC GCGAACGAGG ACTACAACGT GCCGGGGGTC
GGGTCCTGCA TCTTGTGGGA CAAGACGAAG GCCGGGCAGC TGTGGAGCGC GGTGATCAAC
GACACCACGA TGCCGGCCTT GTCGGCGACC GGCGGGGTCT AG
 
Protein sequence
MSGGYGGWTP QEPGGWIPPE PEPTVELRPP SRWAQLRGRL SGGRRDGGGP RPPRVRRFSW 
PKRILAGGLV LVLLVGGYAT WLYFHASGEI RHENVISDYP GRPAEGKGTN WLLVGSDSRE
GLTSDQEDAL HTGTGAVTGN TSRTDSMMIL HSGSNGTSLI SLPRDSYVTI PAWTDSKGKQ
HALSKNKLNA AYAFGDAPLL IKTIEVSTGV RIDHFAEVGF GGFVKVTDAV GGVHLCLDKP
LKDELSGADL KAGCQTLNGA QGLAYVRDRY SDPLGDIGRM QRQRTFLAAL AHKVSSTGVI
LNPFKLVPVL DNSLAAFKVD NGTNLSDLYD MFQHMKGVSG SNGHTIVVPI ANEDYNVPGV
GSCILWDKTK AGQLWSAVIN DTTMPALSAT GGV