Gene Caci_1951 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1951 
Symbol 
ID8333294 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2207395 
End bp2208075 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content69% 
IMG OID644955100 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003112712 
Protein GI256391148 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0924411 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGCGC CGATCCGCAT CCTGCTGGCT GACGACCAGG CGCTGCTGCG GGGCACGTTC 
CGGCTGCTGC TGGACTCCAC TCCGGACTTC GAGGTCGTCG CCGAAGCCGG GGACGGCGCG
GCGGCGGTGA AGCTGGCGCA GGAGCTGTGT CCGGATCTGG TGCTGATGGA CATCCGGATG
CCGGTGCTCG ACGGGTTGGA GGCAACGCGG CTGATCGCGG CGGATCCGGC GCTGGGAAGC
GTCAAGGTTC TGATTCTCAC GACGTTCGAG CAGGACGAGT ACGTCGCCGA GGCGTTGCGT
GCCGGAGCCG GCGGGTTCCT CGGCAAGGGG GTGGATCCCG AGGAGTTGCT GCGGGCGATC
CGCATCGTCG CCGGCGGCAA TTCGCTGCTC TCCCCCGCCG CCACGCGGGC GCTGATCGCC
CGCTTCCTGG CTCAGCCCTC TGATACGGCG CCGACCGTCA GCGCTCCGTT GGACGCGCTG
ACCGCACGGG AGTTGGAGGT CGTCACATTG GTCGCGACCG GGTTGTCGAA CGAGGAGATC
GCCGGGCAGC TGTTCGTCAC GCCGCTGACG GCCAAGACGC ATGTGAACCG CGCGATGACG
AAGCTCGGGG CGCGGGATCG GGCGCAGGTG GTCGTGATCG CGTACGAGTC GGGGCTGGTG
CGTCCTGGAT CAGGGTACTG A
 
Protein sequence
MSAPIRILLA DDQALLRGTF RLLLDSTPDF EVVAEAGDGA AAVKLAQELC PDLVLMDIRM 
PVLDGLEATR LIAADPALGS VKVLILTTFE QDEYVAEALR AGAGGFLGKG VDPEELLRAI
RIVAGGNSLL SPAATRALIA RFLAQPSDTA PTVSAPLDAL TARELEVVTL VATGLSNEEI
AGQLFVTPLT AKTHVNRAMT KLGARDRAQV VVIAYESGLV RPGSGY