Gene Caci_1943 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_1943 
Symbol 
ID8333286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2199250 
End bp2200293 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content74% 
IMG OID644955092 
Producttranscriptional regulator, LacI family 
Protein accessionYP_003112704 
Protein GI256391140 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.102269 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGAAGA GCGCGGGCAT GCGGGATGTG GCCCTGCTGG CCGGGGTGTC GGTCGGCACG 
GTCTCGAACG TGCTGAACCG CCCCGACGCG GTGTCCCCGG GCACCCGGGC ACGGGTCCAG
GCGGCGATCG CGGAGCTGGG CTTCGTGCGC AGCGAGAGCG CGCGGCTGCT GCGCGCCGGC
CGCAGCCAGG TGCTGGCCCT GCTAGCGCTG GACCTGGCCG ACCCGTTCTT CGTCGGCGTG
CTGCGCGGCG CCGAGCAGGC CGCCCGCGCC GCCGATCTCG GCGTGCTGGT GATGGACAGC
GCCTCCAGCG CCGCCACCGA GGCCACGCAC CTGGTGATGC TGGCCCAGCA ACGGGTTCGG
GGCGTGTTGG TGACTCCGGC GGACGCCAGC GGCGCGACGC TGGCGGAGTT CGGCCGCGCG
CGGATTCCGT ACGTGTTGGT GGATCGTGAC ATACCGGGCG GAAACGGATG TCGGGTGCTC
GTGGACGACG TCGCCGGCGG CGCGATGGCG GTCGCGCACC TGATCGCCGG CGGACACCGG
CGCATCGCCT ACGTCGCCGG ACCGCTGGAG CTGCCGCAGT ACCGGGACCG GCTGGAAGGC
GCGCGTCAGG CGATCGCCGA AGCCGATCCG GACGTGGAGC TGGTGACGCT GCTCGGCGCG
CGCGGGGACG TGGCGGCCGG ACGGGACGCC GCGGCGCGCA TGCTCGGGCT GGGGGAGCGC
CCGACCGGGG TGTTCTGCGG CAACGACCTG ATCGCCTTGG GGATGCTGCA AGGGCTGTTC
GCCGCCAGTG TGGCGGTACC GCAGGACGTG GCGATCGTTG GCTACGACGA CCTGGAGGTC
GCGGCGGCGG CGGTCGTGCC ACTGTCGTCG ATACGGCGCC CCGCCTCGCG CGTGGGCAAG
GAGGCCGCGG AGCTTCTGGT CGAGGAGAGC GGGGCGGCGG CGGGGCAGCA TGTGCACCGC
GAGCTGGTTT TTCAGCCGGA GCTGGTGGTG CGGGCTTCTA GCTTGGGGGC GGCGGCTTCG
ACGGCTCGAA ACCCGGACAG CTGA
 
Protein sequence
MTKSAGMRDV ALLAGVSVGT VSNVLNRPDA VSPGTRARVQ AAIAELGFVR SESARLLRAG 
RSQVLALLAL DLADPFFVGV LRGAEQAARA ADLGVLVMDS ASSAATEATH LVMLAQQRVR
GVLVTPADAS GATLAEFGRA RIPYVLVDRD IPGGNGCRVL VDDVAGGAMA VAHLIAGGHR
RIAYVAGPLE LPQYRDRLEG ARQAIAEADP DVELVTLLGA RGDVAAGRDA AARMLGLGER
PTGVFCGNDL IALGMLQGLF AASVAVPQDV AIVGYDDLEV AAAAVVPLSS IRRPASRVGK
EAAELLVEES GAAAGQHVHR ELVFQPELVV RASSLGAAAS TARNPDS