Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_1909 |
Symbol | |
ID | 8333252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 2164511 |
End bp | 2165737 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644955058 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_003112670 |
Protein GI | 256391106 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.765785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCCACGC TCGTCGTTCC CGCGCCCTCC CTCAAGCCGG TTCTGAACCG GCCGCTCATC CTGGTGCTGT CGCTCGCGTG CGGCGTGGCC GTCGCGAACA TCTACTTCCC GCAGGCGATC AGCCCACTGA TAGCCAGCGG ACTGAAGACG AGTAAGAGCT CTGCTGCACT GGTCACGACG TGTGCTCAGT TCGGGTATGC GGCTGGGATC TTTCTCCTGG TTCCGCTCGG CGATCGCCTT CGGCACCGTC GTCTGGTCAC GACGTTGCTG GTGCTCACCA CGGTCGGTCT GGTCCTCGCG GGTACGGCGA CCACGCTCCC GACGCTCGCC GTTGCCAGCA CCCTGATTGG CGTGACCACG GTCGTCCCGC AGATCCTTAT TCCCATGGCG GCCGGGCTCG CCGATCCTGA GCGGCGCGGC GAAGTGACCG GGACTCTGCT GTCCGGGCTG ATCGGCGGAA TCCTTTTGGC CCGCACGTTT TCCGGGACGC TCGGTCAGTG GCTGGGCTGG CGCGCGCCGT ACTTGGTCGC GGCTGTCGCG GTGCTGGTTC TGTCGGTGGC GATGGCGGCG TACCTGCCCG CGACGACTCC GAGCACGACC GAGCGGTATC CGTCGTTGGT GGCGGCTTCG GTGCGGTTGC TGCGCAGCGA ACCGCTGCTG CGGCGCTCGT GTCAGTACCA GGTCTTGGTG TTCGCGGCGT TCAGTGCTGC CTGGACCGCG CTGGCTTTGC ACGTTACCGG CCCGAAGTAT CACCTCGGCA CGCCGGCGGT CGGGGTGTTG GCGTTGGTCG GTGCCGGAAG CATGCTGGCG ACGCCGCGTG CCGGGCGTGC GACCGATCGG CTGGGACCGG ACGCCGTGAA TCTTCGTTGC CTGATCGGCG TGCTGGTCGC TGCGGCTGTG CTGCTGCTCG GCGGGGTCGG GGGAGTGCTC GGTCTCGTCG GTCTGGCCGT CGGGATGCTC GGGCTGGACG TCGCGATGCA GTCCGGGCAG GTTGCGAATC AGGCGCGGAT CTTCGCGCTG CGGCCGCAGG AGCGGGCTCG GCTGAACACG GCGTATATGA CGTGCGCGTT CCTTGGCGGG AGCGCGGGGT CGTGGCTGGG CGTGCGCGCG TATTCGGCTT TCGGGTGGAA CGGTGTGTGC GGTGCTGTCG CGGTCTTGGG GGCGATCGCG CTGGTGCTTT GTCTTGCTCG TGCGCGGCGG CCTCAACAGG CCCGGCAGGC CCGGTAG
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Protein sequence | MSTLVVPAPS LKPVLNRPLI LVLSLACGVA VANIYFPQAI SPLIASGLKT SKSSAALVTT CAQFGYAAGI FLLVPLGDRL RHRRLVTTLL VLTTVGLVLA GTATTLPTLA VASTLIGVTT VVPQILIPMA AGLADPERRG EVTGTLLSGL IGGILLARTF SGTLGQWLGW RAPYLVAAVA VLVLSVAMAA YLPATTPSTT ERYPSLVAAS VRLLRSEPLL RRSCQYQVLV FAAFSAAWTA LALHVTGPKY HLGTPAVGVL ALVGAGSMLA TPRAGRATDR LGPDAVNLRC LIGVLVAAAV LLLGGVGGVL GLVGLAVGML GLDVAMQSGQ VANQARIFAL RPQERARLNT AYMTCAFLGG SAGSWLGVRA YSAFGWNGVC GAVAVLGAIA LVLCLARARR PQQARQAR
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