| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1425 |
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| Symbol | ligB |
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| ID | 8332764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 1622309 |
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| End bp | 1623892 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644954573 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_003112189 |
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| Protein GI | 256390625 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.272318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTGC ACGATGTGGC GACCACCTCC GCCGCGGTCG CCGAGACCTC GGCCCGCTCG
GCCAAGATCG CCCTGCTGGC CGAGCGGCTC CGCACGGCGA CGCCGGAGGA GGTGGCGGTC
GCCGTCCACT ATCTCTCCGG CGAGCTGCCC CAGCGGCAGA TCGGCGTCGG CTGGGCGACA
CTGCGCGAGC TGCCCGCGCC GGCTGACGAC TCCGGTGGCT CCAACAGTTC CGACGGCTCC
GACGGCTCCG CCAGCACCGC CGGACTGGAA GTCGCCGAGG TCGACCGGAT CCTGGAAGAG
ATCGGCAAGA CCACCGGCGC CGGCTCGCAG GCCCGCCGCC GCGATCTGCT GACCGCGCTG
TTCGCCCGCG CCACCGCCGA GGAGCAAGCC TTCCTGCGCC GGCTGCTCAC CGGCGAGCTG
CGCCAGGGCG CGCTGGACGG CGTCATGGCC GACGCGGTCG CGAAAGCCGC CGACGTCCCG
GCCGCCGAGG TGCGCCGGGC GGCGATGTTC GGCGGCGACC TGGCAGCAGC GGCGCAGACC
GCGCTGCGGG CCGGCGTGCC GGGGCTGCGC GAGGTCGGTC TGGTGGTCGG GCGCCCGATC
CAGCCGATGC TGGCCGGGAC GGCAGAGGAC GTCCCCACCG CGCTGGCGAA GGCTTCACCG
GCGGCGCTGG AATGGAAGCT CGACGGAATC AGGGTCCAGA TCCACCGCGA CGGCGACCGC
GTCCAGGTCT TCACCCGCAG CCTGGACGAC ATCACCGAGC GCCTGCCGGA GGCGGTCGCC
CTGGCACGCT CGCTCCAGGT CACCTCCGCG GTCCTCGACG GCGAGGCGCT GGCCCTGGCC
GCCGACGGCC GTCCGCGGCC GTTCCAGGAG ACCGCGAGCC GCACCGGCAG CCGCCGCGAC
GTGGAGCGGA TGCGCGAGCA GATCCCGCTG ACCGTCTTCC TGTTCGACCT GCTGCACCTC
GACGGCCGCG ACCTGGTCGA CCTGCCCTCC CGGGAACGCT CGGACCTGCT CGCCTCGATC
GCCCCGCCGG CTGCCGTGGC GCCGCGCCTG GTCACCGACG ACGCCGACGC GGCGGAGGCG
TTCGCGAAAG ACGCGCTGGA CCGCGGGCAC GAAGGCGTGG TCGTGAAATC TCTCGACGCG
CTCTACAGCG CGGGCCGCCG CGGATCGGGA TGGCTGAAGG TCAAGCCGGT CCACACCCTC
GATCTGGTGG TCCTCGCCGC CGAGTGGGGA CACGGCCGGC GCCGCGGCTG GCTCAGCAAC
CTGCATCTGG CCGCGCGCGA CCCCGAGACC GGCGGGTTCG TCATGCTCGG CAAGACGTTC
AAGGGCATGA CCGACGAACT CCTCACCTGG CAGACCGAGC GCCTGCGCGC GTTGCAGACC
TCTGCCGACG ATTTCGCCGT GCACGTACGG CCCGAGTTGG TCGTCGAGGT GGCGTTCGAC
GGCGTGCAGC GCAGTTCGCG CTATCCCGGC GGCGTCACGC TGCGGTTCGC GCGCGTGGTC
CGGTATCGCG AAGACAAGCG CGCTGAGGAC GCCGATACGA TCGATGCGGT GCGAGCTATC
GGGCAGGGGC AGGAGCAGGC TTAG
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| Protein sequence | MRLHDVATTS AAVAETSARS AKIALLAERL RTATPEEVAV AVHYLSGELP QRQIGVGWAT
LRELPAPADD SGGSNSSDGS DGSASTAGLE VAEVDRILEE IGKTTGAGSQ ARRRDLLTAL
FARATAEEQA FLRRLLTGEL RQGALDGVMA DAVAKAADVP AAEVRRAAMF GGDLAAAAQT
ALRAGVPGLR EVGLVVGRPI QPMLAGTAED VPTALAKASP AALEWKLDGI RVQIHRDGDR
VQVFTRSLDD ITERLPEAVA LARSLQVTSA VLDGEALALA ADGRPRPFQE TASRTGSRRD
VERMREQIPL TVFLFDLLHL DGRDLVDLPS RERSDLLASI APPAAVAPRL VTDDADAAEA
FAKDALDRGH EGVVVKSLDA LYSAGRRGSG WLKVKPVHTL DLVVLAAEWG HGRRRGWLSN
LHLAARDPET GGFVMLGKTF KGMTDELLTW QTERLRALQT SADDFAVHVR PELVVEVAFD
GVQRSSRYPG GVTLRFARVV RYREDKRAED ADTIDAVRAI GQGQEQA
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