| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0963 |
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| Symbol | rpsD |
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| ID | 8332297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 1102938 |
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| End bp | 1103564 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644954116 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003111736 |
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| Protein GI | 256390172 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.877521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.697465 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCGTT ACACCGGCCC CGACTGCAAG CGCTGCCGCC GCGAGAAGAC GAAGCTCTTC
CTCAAGGGCA GCAAGTGCGA TGGCCCCAAG TGCCCGATCG AGATCCGTCC CTACCCCCCG
GGTGAGCACG GCCGCGGTCG CACCAAGGAG AACGAGTACC TGCTCCAGCT TCGCGAGAAG
CAGAAGACCG CCCGCATCTA CGGCGTTCTG GAGAAGCAGT TCCGCGGTTA CTACGAGGAG
GCCAACCGCA AGGGCGGCAA GACGGGTGAG AACCTGCTCC GCATCCTCGA GTCCCGCCTG
GACAACGTGG TCTACCGCGC CGGCTTCGCC AAGTCCCGCG ACCACGCGCG CCAGCTGGTG
CGCCACGGCC ACATCCTGAT CAACGGCCAC AAGGCGAACA TCCCCTCGAT GCGGGTCACC
CCGAGCGACA TCGTCGAGGT GCGCAAGGAG AGCCTGGAGC TCACCCCGTT CGTGGTCGCC
CGCGCCGAGG CCGGCGAGCG TGCCGTGCCG GCGTGGATCG AGGTCATCCC GTCGAAGATG
CGGATCCTCG TGCACTCCCT CCCGGAGCGT GCTGTCATTG ACACGCAGGT CCAGGAGCAG
CTGATCGTCG AGCTCTACTC CAAGTAA
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| Protein sequence | MARYTGPDCK RCRREKTKLF LKGSKCDGPK CPIEIRPYPP GEHGRGRTKE NEYLLQLREK
QKTARIYGVL EKQFRGYYEE ANRKGGKTGE NLLRILESRL DNVVYRAGFA KSRDHARQLV
RHGHILINGH KANIPSMRVT PSDIVEVRKE SLELTPFVVA RAEAGERAVP AWIEVIPSKM
RILVHSLPER AVIDTQVQEQ LIVELYSK
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