| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0834 |
|---|
| Symbol | |
|---|
| ID | 8332164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 969657 |
|---|
| End bp | 971156 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644953985 |
|---|
| Product | amino acid/peptide transporter |
|---|
| Protein accession | YP_003111609 |
|---|
| Protein GI | 256390045 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.000000422142 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCC ACGACGTTCC GTCCCCCGCC CAGGGCCTGC CGCCGCAGGA TGAGGACCGA
GCGTTCTTCG GTCACCCCAA GGGATTGCAG ACGCTGTTCG CGACCGAGTT CTGGGAGCGG
TACAGCTTCT ACGGCATGCG CGGGCTGCTG GTGCTGTTCC TCACCGACAC CGCGGCGCAC
CACGGCCTGG GGCTCTCGCA GGAGGCCGGC AACAGCTTCT ACGGCATCTA CAACAGCCTG
GTCTACCTGA TGGCAGTCCC CGGCGGCTGG ATCGCCGACC GGGTCTGGGG CGCCAGACGC
TCGGTGCTGT GGGGCGGCAT CATCATCGCG CTGGGCCACT ACGTAATGGC CATCCCCACC
GCGGCGACCT CGTTCCTGGG GCTGGGACTG ATCGTGCTGG GCACCGGGCT GCTCAAGCCG
AACATCTCGG CGCAGGTCGG CGGGCTCTAC CACCAGCACG ACAAGCGGCG GGACGCCGGA
TTCACGATCT TCTACATGGC GATCAACATG GGCGCGTTCC TGGCGCCGCT GACCGCCGGC
TGGGTCGGCC AGCACATCAA CTACCACCTG GGCTTCGGGA TCGCGGCGAT CGGCATGACG
TTCGCGGTCG TCTGGTACGT CGTCGAGGGC AAGCACCTGG GCACCGTCGG GCTGCGCCCG
CCGAAGCCGA TCACGCCGCC GGAGCTGCGG CGCTCGCTGC GGGCCGGCGC GGTGATCGTC
GCGATCGTGC TGGCGATCGT GCTGGGCTGG ATGGCGATCA CCGAGTGGTC GGTCTCGGCG
TTCGCCGACG GGCTGGCCGC GCCGATCATC GCCACGCCGT TCGTCTACTT CGGCTACATG
TTCAGCCGCG GCGGGCTGAG CGCCGGGGAG CGGCCCAAGC TGATGGCGTT CGTCGCCTTC
TTCATCGGCG CGACCGTGTT CTGGATGATC TACGACCAGT CCGGCAGCCA GCTGAACCTG
TTCGCCGCGG ACAAGACCGA CCTGTCGATC TTCGGCTGGG AGATGCCCTC GGTGTGGCTG
CAGTCGGCGA ACCCTTTCTA CATCATGGTG TTCGCGCCGG TCTTCGCCGG GATGTGGCAG
CGCCTGGGCG ACCGGGCGCC GCGGACCTCG GTGAAGTTCG CGCTCGGGCT GGTGGTGATC
GGCTGCTCGT TCTTCGTGAT GAGCATCGCC GGCAAGGACG CCACACCGAC GCACCGCGTC
TCGATCGTCT TCCTGGCGGT CACCTACCTG CTGCAGACGA TCGGCGAGCT GTGCCTGTCC
CCGGTCGGGC TGTCGGTGAC CACGCAGCTG GCGCCGGCCC GGTTCGCCGG GCAGATGCTG
GGGCTGTGGT TCCTGGCCAC CGCCACGGGC AACGCGCTCA ACGTGTACGT CACCAAGCTC
AGCACCGTGA TGAGCGACTT CACCTACTTC CTGACGCTGG GCGCCGTGGC GGCGGGCATC
GGCGTGCTGG TGTTCCTCGC CTCGCCGGTC ATCAACCGGC TGATGGGGGA TGTGCGGTAG
|
|---|
| Protein sequence | MTTHDVPSPA QGLPPQDEDR AFFGHPKGLQ TLFATEFWER YSFYGMRGLL VLFLTDTAAH
HGLGLSQEAG NSFYGIYNSL VYLMAVPGGW IADRVWGARR SVLWGGIIIA LGHYVMAIPT
AATSFLGLGL IVLGTGLLKP NISAQVGGLY HQHDKRRDAG FTIFYMAINM GAFLAPLTAG
WVGQHINYHL GFGIAAIGMT FAVVWYVVEG KHLGTVGLRP PKPITPPELR RSLRAGAVIV
AIVLAIVLGW MAITEWSVSA FADGLAAPII ATPFVYFGYM FSRGGLSAGE RPKLMAFVAF
FIGATVFWMI YDQSGSQLNL FAADKTDLSI FGWEMPSVWL QSANPFYIMV FAPVFAGMWQ
RLGDRAPRTS VKFALGLVVI GCSFFVMSIA GKDATPTHRV SIVFLAVTYL LQTIGELCLS
PVGLSVTTQL APARFAGQML GLWFLATATG NALNVYVTKL STVMSDFTYF LTLGAVAAGI
GVLVFLASPV INRLMGDVR
|
|---|
| |