Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0766 |
Symbol | |
ID | 8332096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 896125 |
End bp | 897624 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644953918 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003111542 |
Protein GI | 256389978 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.176707 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGACA CCATCCAGAC CGCGGCCGCC GACTCGGGCG CGGTCGCCGA CAAAGATCCC AGGCGTTGGA AAGCCCTGAT CTTCATAGCC GTGGCCCAGC TGATGGTGGT CCTGGACGGC ACGATCATGA ACATCGCTCT GCCGTCCGCC CAACGCTCCC TGGGCTTCTC CGACGGCAGC CGGCAGTGGC TGATCACCGG CTACACCCTG GCGTTCGGCA GCCTGCTGTT GCTCGGCGGC CGGATCGCCG ACTACACCGG CCGCAAGCGC GCCCTGCTGG TCGGTCTGAC CGGCTTCGCG CTGGCCTCGG CGATCGGCGG CGTGGCTCCG GACTTCGCCG TGCTGCTCAT CGCGCGCTGT CTGCAGGGGG CGTTCGGCGC GCTGCTCGCC CCGGCGGCGC TGTCGCTGCT GGCGACGACA TTCACCGAGC CGCTGGAGCG CGCGAAGGCG TTCGGGCTGT TCGGCGGCGT CGCGGTCGGC GGCAACGCGA TCGGGCTGCT GCTCGGCGGG CTGCTGACCG AGTACCTGAA CTGGCGGTTC TGCCTGTACG TCAACATCCC GATCGCCGCG ATCGCGCTGG CCGGCGGGAT GAAGGAGATC CGCGAGTCGC GCGCCGAGGG CCGTATGAAG CTGGACCTGC CCGGCGTGCT GCTGGTCGTC GGCGGACTGG TCGCGATGGT CTACGGGCTC GGACAGGCCT CGACCGACGG CTGGGGGTCC GCCACGGTCC TGGGCTGCCT GATCGGCGGC GCGGTGCTGC TGGCCGGGTT CCTGGTGGTG GAGTCCCGGG TGGAGGCGCC GCTGCTGCCG CTGCGCGTGC TGCTGTCCCG GACCCGCGGC GGGAGCTACC TCGCCGTCGG CACGGCTGCG GTGGGGATGT TCGCGCTCTT CCTGTTCCTG ACGTACTACA TGCAGGACGT GAAGAAGTAC TCGGCGGTCA TGACCGGCGT CGCGTTCCTG CCGATGACCG CGGCCATCAT GATCTCGGCG GTGCTGCTCG GCAGCCGGCT GGTGCCGAAG GTGGCGCCGC GGCTGCTGAT GGTCCCCGGC ATGCTGGTCG CGGCCGGCGG GCTGGCGCTG ATGACGACGG TGAAGCCGGA CACCGGCTAC GTGGCCGGCG TGCTGCCGGT CGAGGTCCTG GTGGGCCTGG GGCTCGGACT GGTGATGGCG CCGGCGATGA ACTACGCCAC GCACAACGTG CGTCCCGAGG ACGCCGGCGT CGCCTCGGCC ACGGTCAACA CCTCCCAGCA GGTGCTCGCC TCGGTCGGGA TCGCGCTGTC CAACACCGTC GCGGCGAGCG CCACGACGTC GTACCTGAAG TTGCACCGGC CGTCCCCGAC GCTGGTGAAC GACGCCGTGG TGCACGGGTT CACGACGGCG TCGGGCGTCG CGGCGGCCAT CGTGCTGGGC GGCGCGGTGA TCGTCGCGCT GCTGATGAAC ACCGGGAAGC CGGACCCGTC GCAGGCTTCT GCGGACGGTC CGGTGGCGGT GCACGTCTGA
|
Protein sequence | MTDTIQTAAA DSGAVADKDP RRWKALIFIA VAQLMVVLDG TIMNIALPSA QRSLGFSDGS RQWLITGYTL AFGSLLLLGG RIADYTGRKR ALLVGLTGFA LASAIGGVAP DFAVLLIARC LQGAFGALLA PAALSLLATT FTEPLERAKA FGLFGGVAVG GNAIGLLLGG LLTEYLNWRF CLYVNIPIAA IALAGGMKEI RESRAEGRMK LDLPGVLLVV GGLVAMVYGL GQASTDGWGS ATVLGCLIGG AVLLAGFLVV ESRVEAPLLP LRVLLSRTRG GSYLAVGTAA VGMFALFLFL TYYMQDVKKY SAVMTGVAFL PMTAAIMISA VLLGSRLVPK VAPRLLMVPG MLVAAGGLAL MTTVKPDTGY VAGVLPVEVL VGLGLGLVMA PAMNYATHNV RPEDAGVASA TVNTSQQVLA SVGIALSNTV AASATTSYLK LHRPSPTLVN DAVVHGFTTA SGVAAAIVLG GAVIVALLMN TGKPDPSQAS ADGPVAVHV
|
| |