| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0743 |
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| Symbol | |
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| ID | 8332073 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 863710 |
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| End bp | 866277 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644953895 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003111519 |
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| Protein GI | 256389955 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.565533 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG CGCCAGAGCA GCAGCCCCAC AGGGAGCGGC AGGACAATCC CGGCTGGCGC
GGACCGGGGT GGGCCATGAC CACCTCGGTG TTCGGCCAGG GCTCGGAGAA CGACGCGCAG
CGCCACCTGG GGCGGATGGC CGGAGTGATC GAGCGGGTGC GCTCGGCGAC CTTCATGCTC
GACGGCGATG GCGTCATCCG CGAGTACCGG CTCAACGCCG AGGAGCTGCT GGGATGGCAG
CGTACGGAGA TGATCGGCAA GCCGTTCCAC GCCATGTTCC GGGGCGAGGA CTTCGCCGCC
GCCGACCGGA TGGTGCAGGC GGTCCAGTCC GGTGACGACG CGCGCGGCGC GCTGGGCGCC
GTCACGCCGA AGGGCGCGAG CGTCCCGGTC GACGTGCATC TCATGGGTTT GCGGGACGGC
GAAGGACACG TTGTCGTGTT CGGGTACGCC AACTCCGCCG AGGACCTGGT CCGGATCACA
CGCGACCGCG CGGTCCTGGA CTCGCTGTTC GAACAGTTCC CGGTCGGGAT CGTGGTCTAC
GACGAACGGG GACGCTACGT CCGGCTGAAC CGCGCGCTGG AGCGGATCAA CGGTCTGCCG
GTCTCCGAGC ACATCGGCAA GCGGGTGCGC GAGGTGCTGC CGGGCCTGGA CCCGCGGCTG
GAGGAGATCC CCGACGAGGT GCTGCGCACC GGCATCCCGG TCGTGGACGA GCAGTACGGC
GGGTTCACGC CGGCTTCCGA CGAGGAGCGG GTCTGGTCCG TCAGCTACAA CCGGCTGCAC
GGTCCCGAGG GCGAGGTCAT CGGGTTGTCC GGGCTGATCC TCGACGTCAC CGACCGGCAT
CGCGCGGCGG CGGCCGCGGC CGGGGCACGT CGGCGCCTGG CGCTGGTGAA CAAGGCGGGC
TCGCGGATGG GGACCGCGCT GGACGTCGAG CGCACGGCGC GGGAGCTGGC GGACGTGGCG
GTCCCGGACT TCGCCGACGC GATCGTCATC GAGATCAAGG AAGAGGTCTT CGACGAGCGG
ATCGGGCCGG TCGGACCGGT GTGGTTGGCG CCGGTGCGCC GCCGCCGGGT GCTGGTGCAC
CAGGGCTTCG GCGCCGTCCC GGATCCGGTG CGGGCCGAGG GGTTCAGCGC CTGGTCCACC
GATTCCGACA TCAGCGACCG CATGCTCGAC GGCGCGGCGT GGCACTCCTC GGCCGGGATC
AGCGCGGTCG CCAAGGAGCC GATCCGCTCC GTCGACGGCA CGCTGCTGTG GCAGCCGACC
GGCGGCGACT CGATCCTGGT GCCGCTGTGG GCCCGCGAGG CGCTGCTCGG CGTGGTGCAC
TTCCACCGGC ATCCGGAGAG CCCGCCCTTC GAGCCGGAGG ACATCGAGGT CGCCGAGGAG
ATCACCACCC GCGCCGCGGT GTCGATGGAC AACGGCCGGC TGTACTACCG CGAGCGCACC
ACCGCGTTGA TGCTGCAGCG CGCCCTGCTG CCGCAGCGGA TACCGAGCCT GCCGGGCGTG
CAGGTGGCGT ACCGCTACCT GCCGGGCTCG GTCGGCGCGG AGGTCGGCGG CGACTGGTTC
GACGTGATCC AGCTCTCCGG CGCGCGCGTG GCCCTGGTGG TCGGCGACGT GATGGGCGTC
GGCGTGCGCG CCGCCGGCAT CATGGGCCAG TTCCGCACCG CCGCGCGCAC CCTGGCCGGC
CTGGACCTCT CCCCGGCGCA GGTCCTCCAC CAGCTGGACG AACTCGGCGC GTCACTGTCC
GAGAACCACC TGGCGACCTG TATCTACGCG GTCTACGACC CGGCGACGGG CAAGCTCGCG
GTCTCCCGCG CCGGCCACCC GCCGCCGCTG CTCCTGGCAC CGGACGGCAC GGTCGGTGGC
CTCGACGTAC CGCCCTCGCC CCCGCTGGGC GTCGGCGGCG GCGCGTATCG CAGCTGGGTG
TTCGAGACGA AGGAATTCGA CATCCCCGAC CGCTCCCGCC TGGCCTTCTA CACAGACGGC
ATGGTCGAGG ACAAGGGCCG CGACATCGAC GAGGGCATCG GGGTGATGGC AGCATTGTTG
GCGAACTGTC CCCCCGACTC GTTGGAAGAG TGCTGCGACG CGGTGACCGA CGTCCTCGGC
ATCACCGGCG ACACATCCGA CGACGCGACC CTCCTCCTGG CCCAGGTCCA GTCGATCCCC
CCGGACCGCA AAGCCCACTG GCAGCTCGAC GCCCACCCCT CCGCAGTCTC AGACGCCCGC
CGCAAGGTCC GCACGAAACT CGTGGACTGG GACATGAGCA GCCTGTCGGA CACCGCCGAG
CTGCTGGTGA GCGAGCTGGT GACGAACGCC CAGCGCTACG GACGCTCCCC GGTGTCACTG
GACATGCTCA AGACCGACCG CCTCCTGGTC GAGGTCGGCG ACGCCCTGGA CGTGGTACCC
CAGGTCCGCC GCGCACAGGA GACAGACGAG GGCGGACGCG GCCTGCAACT GGTCAACCAG
CTGGCAACAC GCTGGGGCAC GCGGACGACG GGCAACGGGA AGATCGTGTG GTTCGAGCTG
GCCACCGGGG AGGGGGGACT GGGGCAGCGG GAGGATTCGC GGGGGTGA
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| Protein sequence | MSDAPEQQPH RERQDNPGWR GPGWAMTTSV FGQGSENDAQ RHLGRMAGVI ERVRSATFML
DGDGVIREYR LNAEELLGWQ RTEMIGKPFH AMFRGEDFAA ADRMVQAVQS GDDARGALGA
VTPKGASVPV DVHLMGLRDG EGHVVVFGYA NSAEDLVRIT RDRAVLDSLF EQFPVGIVVY
DERGRYVRLN RALERINGLP VSEHIGKRVR EVLPGLDPRL EEIPDEVLRT GIPVVDEQYG
GFTPASDEER VWSVSYNRLH GPEGEVIGLS GLILDVTDRH RAAAAAAGAR RRLALVNKAG
SRMGTALDVE RTARELADVA VPDFADAIVI EIKEEVFDER IGPVGPVWLA PVRRRRVLVH
QGFGAVPDPV RAEGFSAWST DSDISDRMLD GAAWHSSAGI SAVAKEPIRS VDGTLLWQPT
GGDSILVPLW AREALLGVVH FHRHPESPPF EPEDIEVAEE ITTRAAVSMD NGRLYYRERT
TALMLQRALL PQRIPSLPGV QVAYRYLPGS VGAEVGGDWF DVIQLSGARV ALVVGDVMGV
GVRAAGIMGQ FRTAARTLAG LDLSPAQVLH QLDELGASLS ENHLATCIYA VYDPATGKLA
VSRAGHPPPL LLAPDGTVGG LDVPPSPPLG VGGGAYRSWV FETKEFDIPD RSRLAFYTDG
MVEDKGRDID EGIGVMAALL ANCPPDSLEE CCDAVTDVLG ITGDTSDDAT LLLAQVQSIP
PDRKAHWQLD AHPSAVSDAR RKVRTKLVDW DMSSLSDTAE LLVSELVTNA QRYGRSPVSL
DMLKTDRLLV EVGDALDVVP QVRRAQETDE GGRGLQLVNQ LATRWGTRTT GNGKIVWFEL
ATGEGGLGQR EDSRG
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