Gene Caci_0460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0460 
Symbol 
ID8331787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp521339 
End bp524392 
Gene Length3054 bp 
Protein Length1017 aa 
Translation table11 
GC content68% 
IMG OID644953626 
Productglycoside hydrolase family 9 
Protein accessionYP_003111253 
Protein GI256389689 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTCC GCACACCCCG GTTCCGCATC ACGGGCCCGA CCGCGACGCT GCTCGCGGGC 
CTGCTGGTCG CCAACGTGCT GACGCTGGCG ATACCGACCG CAGCGCACGC CGGCACGCCC
TCGGCCACCG GCGAGTTCGA CTACGCCGAG GCGTTGCAGG ACTCGATGCT CTTCTACGAG
TCGCAGCGCT CCGGCCCGCT CCCGGCCGAC AACCGCGTGT CCTGGCGCGG ACCGTCGGAC
CTCACCGACG GCGCCGACCA CGGCCTGGAC CTGACCGGCG GCTACCACGA CGCCGGCGAC
GAGGTGAAGT TCGGCCTGCC CGAGGCGTAC TCGATGACCG CGCTGGCCTG GGGAGCGATC
GACGACAAAT CCGGGTACCA GAAGTCCGGC CAGTGGCAGT ACCTGGAACG CGACCTGCGG
TGGGGCGACG ACTACATCAT CAAGGCGCAC CCCTCGCCGC ATGTGTTCTA CGGCCAGGTC
GGCGACGGCA GCAGCGACCA CAGCTTCTGG GGACCGGCCG AGGTCAACCC CGAGCCGAGG
CCTTCCTACG CGGTGACCGA GTCCTGCCCG GGCTCGGACC TGGTGGGCCA GGCGTCCGCG
GCGATGGCCG CGTCCTCGAT CGTGTTCCAG ACCGATGATC CCTCGTACTC CGCGAAGCTG
CTCGCGCAGG CGAAGTCCCT GTACGAGTTC GCCGACGACT ACCGCGGCAA GTACGACGCC
TGCATCACCG GCGCTTCCAG CTTCTACACC TCGTTCAGCG GCTACTGGGA CGAGCTGGTG
TGGGGCGCCA TCTGGCTCTA CAAGGCGACC GGCGACACCG CGTACCTGAC CAAGGCCGAG
ACGTACTTCG CCAACCTGAA CAAGGCGAAT CAGACCACGA CGCCGGAATA CGCCTGGACG
ATCAGCTGGG ACGACTCCTC GTACGCGTCG TACATCCTGC TCGCCGAGAT CACCGGCCAG
CAGCAGTACA TCGACGACGC CGAGCGCAAC CTGGACTGGT TCACCACCGG CTACAACGGC
CAGCACGTGA GCATGTCCCC CGGCGGTGAG GCGCAGGTCG ACGTCTGGGG CACGGCGCGC
TACTCCGCGA ACGAGGCATA CCTGGCCCTG GACTTCGAGA ACTGGCTCAA ATCGCAGAGC
CTTGATACGG CGAGGCAGGC CACGTACCAC GACTTCGCGG TGCGCCAGAT GAACTACATC
CTCGGCGACA ACCCGAACAA GGAAAGTTAC GAGGTCGGCT TCACCAACGG CGGCACGAAC
ACCGCCTGGC CGCAACAGAT CCACAACCGG CCCGCCCACG ACTCGTGGGA CCAGAGCATG
AGCGACCCGC CGAACACCCG GCACCTGGAC TACGGCCTGC TGGTCGGCGG CCCGACCTCC
GGCGACGGCT TCACCGACAG CCGCCAGAAC TACCAGCAGA CCGAGGGCGC GCTGGACTAC
AACGCCCTGT TCTCCGGCGC GCTCGCCGAG CTGACCACCG AGTACGGCGG CACGCCGCGC
GCGAACTTCC CGCCGACCGA GACGCCCGAC GGTCCCGAGG AGCTCATGCA GGCCTCGCCG
AACCAGACCG GCTCGAACTT CATCGAGATC AAGGCCGAGG TGGTCAACAA GTCCGGCTGG
CCGGCCCGGC ACCTGACCAA CGGCTCGTTC CGCTACTACT TCACCCTCGA CGCCGGCGAG
ACCGCCTCGC AGCTCCAGCT GACCTCGCCC TACAGCCAGT GCAACGCGCC GGGCCCGATC
ACGCAGTACT CCGGCTCGAC CTACTACGTG ACGATCAGCT GCGCCGGCGA CGACGTCGCC
CCGGCCGGGC AGTCGCAGTT CCACCGCGAG GTGCAGTTCC GCATCACCTT CCCGGCGGCG
CACGACTACA CCAAGGACTG GTCCTACCAG GACCTGGTGG GCATGGCGAC CAACTCGACG
CCCGTGAACA CCAGCCACAT CGAGCTCTAC GACGGCAGCA CGAAGGTGTG GGGCACCGCC
CCGGGCAGCG GCACGCCGGT CACCCCGCCC GGAACGCCCG GGACGCCGAC CGCCTCGGCG
ATCACGGCCA CCGGCGCGAC GCTGGCGTGG GCCGCCTCGA CTCCGGGCAC GAACGCGGTG
GCCGGCTATG ACGTGTACAG CGTGTCGGGC GCGACCTCGA CCAAGGTGGC GTCCTCGACC
ACGACGTCGG CGCCGCTGAC CGGGCTGACG CCGGGCACGG CGTACACGTT CGACGTCGTG
GCGCGGGACA GTGCGGGCAA CCAGTCCCCG GCATCGCCGA CGGTCGCGGT GACCACCACG
TCCTCGTCCG CGACGCCGCC GAGCGCCCCG ACCGCGCTGA CGGTCACCGC GACCGGGTCC
ACGAGCGTCG GGCTGAGCTG GACCGCCGCC AAGGCGGGGA CGTCGGCGAT CGCGAGCTAC
ACCGTCTACA AGACCGGTTC GCCGGCGACC GCGGTCGCGA CCGTGGCAGC TCCGGCGATC
ACCGCGACTG TCAGTGGCCT GACGCCCTCG ACGGTGTACC AGTTCTATGT CGTGGCGACC
GATGTCAATG GCCTGAGTTC CGCTGCGTCA TCGAGCGTAT CGGCGACCAC CACAGCGGGC
ACTCCGCCGC CGCCGTCGTC CGTCTCGGTG CAGTACGAGA CCAGCGTCAC CACAGCCACC
ACGCAGTCGT TCCAACCATT GCTGAACGTG GTCAACAACG GGACCAGCGC GGTGCCGCTG
TCATCGGTGA CCATCCGCTA CTGGTTCACC TCCGACGGCG GCTCCAGCAC CTTCGCCACG
AACTGCTGGT ACGCCGTCAT CGGCTGCGCG AAGGTCACGC AGTCAGTGTC CTCGGTAACC
GCGACAACCG GCGCCGACCA CTACGTCCAG GTCGGCTTCA CCACCGCGGC CGGCAGCCTC
GCCCCCGGCG CCTCGACCGG CCAGGTCCAA AGCGCGATCA ACAAGAGCGA CTGGTCGAAC
TTCACCCAGA CCAACGACTA CAGCTTCAAC GCAGCCGACA CGGCGTGGAC GGCGAACACG
AACGTCACCG TCTACGTCAA CGGAACGCTG GTCTGGGGAA CCGAACCGCA CTGA
 
Protein sequence
MRLRTPRFRI TGPTATLLAG LLVANVLTLA IPTAAHAGTP SATGEFDYAE ALQDSMLFYE 
SQRSGPLPAD NRVSWRGPSD LTDGADHGLD LTGGYHDAGD EVKFGLPEAY SMTALAWGAI
DDKSGYQKSG QWQYLERDLR WGDDYIIKAH PSPHVFYGQV GDGSSDHSFW GPAEVNPEPR
PSYAVTESCP GSDLVGQASA AMAASSIVFQ TDDPSYSAKL LAQAKSLYEF ADDYRGKYDA
CITGASSFYT SFSGYWDELV WGAIWLYKAT GDTAYLTKAE TYFANLNKAN QTTTPEYAWT
ISWDDSSYAS YILLAEITGQ QQYIDDAERN LDWFTTGYNG QHVSMSPGGE AQVDVWGTAR
YSANEAYLAL DFENWLKSQS LDTARQATYH DFAVRQMNYI LGDNPNKESY EVGFTNGGTN
TAWPQQIHNR PAHDSWDQSM SDPPNTRHLD YGLLVGGPTS GDGFTDSRQN YQQTEGALDY
NALFSGALAE LTTEYGGTPR ANFPPTETPD GPEELMQASP NQTGSNFIEI KAEVVNKSGW
PARHLTNGSF RYYFTLDAGE TASQLQLTSP YSQCNAPGPI TQYSGSTYYV TISCAGDDVA
PAGQSQFHRE VQFRITFPAA HDYTKDWSYQ DLVGMATNST PVNTSHIELY DGSTKVWGTA
PGSGTPVTPP GTPGTPTASA ITATGATLAW AASTPGTNAV AGYDVYSVSG ATSTKVASST
TTSAPLTGLT PGTAYTFDVV ARDSAGNQSP ASPTVAVTTT SSSATPPSAP TALTVTATGS
TSVGLSWTAA KAGTSAIASY TVYKTGSPAT AVATVAAPAI TATVSGLTPS TVYQFYVVAT
DVNGLSSAAS SSVSATTTAG TPPPPSSVSV QYETSVTTAT TQSFQPLLNV VNNGTSAVPL
SSVTIRYWFT SDGGSSTFAT NCWYAVIGCA KVTQSVSSVT ATTGADHYVQ VGFTTAAGSL
APGASTGQVQ SAINKSDWSN FTQTNDYSFN AADTAWTANT NVTVYVNGTL VWGTEPH