Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0402 |
Symbol | |
ID | 8331729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 448361 |
End bp | 449890 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644953568 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_003111195 |
Protein GI | 256389631 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.15496 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.237492 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGATC TTCGGACGAC CGGCGCGGAG GCTCAGACCG CCGACGCCGC ACCCGCCGAC CACACCGACC ACACCGACCC CCACCACGCC AGGCGCTGGT TCATCCTGGG GATCATCGGC CTGGCGCAGT TGATGATCGT GCTCGACGTG ACGATCGTGA ACATCGCGCT GCCGGACGCC CAGAAGGCGC TGGGCTTCTC GAACGGCGAC CGGCAGTGGA TCGTCACCGC CTACTCCCTG GCCTTCGGCA GCCTGCTGCT GCTGTTCGGA CGGGTGTCCG ACGTCATCGG CCGCCGCGCG ATGTTCCTGA TCGGCCTGGT CGGCTTCGCC GCGGCCTCCG CGCTGGGCGG CGCCGCGCCG AACTTCGAGA TCCTGGTCCT GGCCCGCGCG CTGCAGGGCG TCGCCGGCGC CATGCTCGCC CCGGCCGCGC TGTCGCTGCT GTCCACGACC TTCACCGAGG CCAAGGAGCG CGCCACCGCC TTCGCCGTGT TCGGCGGCAT CGCCGGCTCC GGCGCCGCGA TCGGCATGCT GCTCGGCGGC GTGCTGACCG AGTTCCTGAA CTGGCGCTGG ACGCTGTTCG TCAACGTCGG CATCAGCGTT ATCGCGATCG CCGGCGCCGC CGTCCTGATC CCGCGCCACG CGCGCAGCGC CGACCGGCCC TCGCTCGACA TCCCCGGCAC GGTCCTGGTC TCGGCGGGCC TGTTCGGCAT CGTCTACGGC TTCGCCAACG CCGAATCGCA TCCGTGGAGC GCCCCGGGGA CCTGGGGCTT CCTGGTCGCC GGCCTGGTCC TGCTGGGCGC GTTCACCTTC TGGCAGACCC GCACCAAGCA CCCGCTGCTC CCGCTGCGCG TCATCCTCGA GCGCAACCGC GGCGGCTCCT ACCTGGCGAT GTTCCTCACC GGCATCGGCA TGTTCGGCGT GTTCCTGTTC CTGAACTACT ACCTGCAGGA GATCCTGCGC TACTCCCCGG TGATGACCGG CGTGGCGTTC CTGCCGATGG TCGCCGCCCT GATGATCACC GCGACGATCA GCACCACCCA GCTCTACCCG CGCGTCGGCG CCAAGATCCT GGTCTTCGCC GGCATGCTGC TGGCCGGCGC CGGCATGGTC TGGCTCACCG GCATCAGCCT GACCTCCAGC TACGCGGCGA ACATCCTCGG CCCGACCGTG GTCGTCGGCA TCGGCATGGG CGCCATCTTC GCCCCGGCGA TGAACGCCGC CACCTCCGGC GTCGAGGCCG GCGACGCCGG CGTCGCCTCG GCGATGGTGA ACACCGCGCA GCAGATCGGC GGCTCGATCG GCACCGCGCT GCTGAACTCC CTCGCCGCCA GCGCGCTGAC CAGCTACCTG GTCGGCAAGA ACGCCACGAA CCCGGTCGTG CAGGCCAACG CGGCGATCCA CAGCTACGTG GTCGCGTTCT GGTGGGCCGC GGCCATCTTC GGAGTCGGCG CGATCATCTG CGGCCTGATT CTGAAGTCGG GCAAGCCGGA TCCGGCGGAC CCGGACGCCG CTCCGGCGAT CCACGCCTAG
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Protein sequence | MADLRTTGAE AQTADAAPAD HTDHTDPHHA RRWFILGIIG LAQLMIVLDV TIVNIALPDA QKALGFSNGD RQWIVTAYSL AFGSLLLLFG RVSDVIGRRA MFLIGLVGFA AASALGGAAP NFEILVLARA LQGVAGAMLA PAALSLLSTT FTEAKERATA FAVFGGIAGS GAAIGMLLGG VLTEFLNWRW TLFVNVGISV IAIAGAAVLI PRHARSADRP SLDIPGTVLV SAGLFGIVYG FANAESHPWS APGTWGFLVA GLVLLGAFTF WQTRTKHPLL PLRVILERNR GGSYLAMFLT GIGMFGVFLF LNYYLQEILR YSPVMTGVAF LPMVAALMIT ATISTTQLYP RVGAKILVFA GMLLAGAGMV WLTGISLTSS YAANILGPTV VVGIGMGAIF APAMNAATSG VEAGDAGVAS AMVNTAQQIG GSIGTALLNS LAASALTSYL VGKNATNPVV QANAAIHSYV VAFWWAAAIF GVGAIICGLI LKSGKPDPAD PDAAPAIHA
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