Gene Caci_0402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0402 
Symbol 
ID8331729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp448361 
End bp449890 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content71% 
IMG OID644953568 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003111195 
Protein GI256389631 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.15496 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.237492 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGATC TTCGGACGAC CGGCGCGGAG GCTCAGACCG CCGACGCCGC ACCCGCCGAC 
CACACCGACC ACACCGACCC CCACCACGCC AGGCGCTGGT TCATCCTGGG GATCATCGGC
CTGGCGCAGT TGATGATCGT GCTCGACGTG ACGATCGTGA ACATCGCGCT GCCGGACGCC
CAGAAGGCGC TGGGCTTCTC GAACGGCGAC CGGCAGTGGA TCGTCACCGC CTACTCCCTG
GCCTTCGGCA GCCTGCTGCT GCTGTTCGGA CGGGTGTCCG ACGTCATCGG CCGCCGCGCG
ATGTTCCTGA TCGGCCTGGT CGGCTTCGCC GCGGCCTCCG CGCTGGGCGG CGCCGCGCCG
AACTTCGAGA TCCTGGTCCT GGCCCGCGCG CTGCAGGGCG TCGCCGGCGC CATGCTCGCC
CCGGCCGCGC TGTCGCTGCT GTCCACGACC TTCACCGAGG CCAAGGAGCG CGCCACCGCC
TTCGCCGTGT TCGGCGGCAT CGCCGGCTCC GGCGCCGCGA TCGGCATGCT GCTCGGCGGC
GTGCTGACCG AGTTCCTGAA CTGGCGCTGG ACGCTGTTCG TCAACGTCGG CATCAGCGTT
ATCGCGATCG CCGGCGCCGC CGTCCTGATC CCGCGCCACG CGCGCAGCGC CGACCGGCCC
TCGCTCGACA TCCCCGGCAC GGTCCTGGTC TCGGCGGGCC TGTTCGGCAT CGTCTACGGC
TTCGCCAACG CCGAATCGCA TCCGTGGAGC GCCCCGGGGA CCTGGGGCTT CCTGGTCGCC
GGCCTGGTCC TGCTGGGCGC GTTCACCTTC TGGCAGACCC GCACCAAGCA CCCGCTGCTC
CCGCTGCGCG TCATCCTCGA GCGCAACCGC GGCGGCTCCT ACCTGGCGAT GTTCCTCACC
GGCATCGGCA TGTTCGGCGT GTTCCTGTTC CTGAACTACT ACCTGCAGGA GATCCTGCGC
TACTCCCCGG TGATGACCGG CGTGGCGTTC CTGCCGATGG TCGCCGCCCT GATGATCACC
GCGACGATCA GCACCACCCA GCTCTACCCG CGCGTCGGCG CCAAGATCCT GGTCTTCGCC
GGCATGCTGC TGGCCGGCGC CGGCATGGTC TGGCTCACCG GCATCAGCCT GACCTCCAGC
TACGCGGCGA ACATCCTCGG CCCGACCGTG GTCGTCGGCA TCGGCATGGG CGCCATCTTC
GCCCCGGCGA TGAACGCCGC CACCTCCGGC GTCGAGGCCG GCGACGCCGG CGTCGCCTCG
GCGATGGTGA ACACCGCGCA GCAGATCGGC GGCTCGATCG GCACCGCGCT GCTGAACTCC
CTCGCCGCCA GCGCGCTGAC CAGCTACCTG GTCGGCAAGA ACGCCACGAA CCCGGTCGTG
CAGGCCAACG CGGCGATCCA CAGCTACGTG GTCGCGTTCT GGTGGGCCGC GGCCATCTTC
GGAGTCGGCG CGATCATCTG CGGCCTGATT CTGAAGTCGG GCAAGCCGGA TCCGGCGGAC
CCGGACGCCG CTCCGGCGAT CCACGCCTAG
 
Protein sequence
MADLRTTGAE AQTADAAPAD HTDHTDPHHA RRWFILGIIG LAQLMIVLDV TIVNIALPDA 
QKALGFSNGD RQWIVTAYSL AFGSLLLLFG RVSDVIGRRA MFLIGLVGFA AASALGGAAP
NFEILVLARA LQGVAGAMLA PAALSLLSTT FTEAKERATA FAVFGGIAGS GAAIGMLLGG
VLTEFLNWRW TLFVNVGISV IAIAGAAVLI PRHARSADRP SLDIPGTVLV SAGLFGIVYG
FANAESHPWS APGTWGFLVA GLVLLGAFTF WQTRTKHPLL PLRVILERNR GGSYLAMFLT
GIGMFGVFLF LNYYLQEILR YSPVMTGVAF LPMVAALMIT ATISTTQLYP RVGAKILVFA
GMLLAGAGMV WLTGISLTSS YAANILGPTV VVGIGMGAIF APAMNAATSG VEAGDAGVAS
AMVNTAQQIG GSIGTALLNS LAASALTSYL VGKNATNPVV QANAAIHSYV VAFWWAAAIF
GVGAIICGLI LKSGKPDPAD PDAAPAIHA