Gene Caci_0314 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0314 
Symbol 
ID8331641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp353797 
End bp355236 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content69% 
IMG OID644953481 
Productsugar transporter 
Protein accessionYP_003111108 
Protein GI256389544 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00879] MFS transporter, sugar porter (SP) family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACCA GGACCGGCCG CGAGAGCGGT CCCAACCCGC CGGGCGATTC CGCGGCGGCC 
CGCGTCGCGC CGCGCATCGT GTTCATCGCT GCCGCCGCGG CCTTGGGCGG CTTCCTGTTC
GGCTACGACT CCGCGGTGAT CAACGGCGCG GTCACCGGGA TCCAGCACGA CTTCAACGTC
GGCAGCGGGA CGACCGGCTT CGTCGTCGCC GCGGCCCTGC CCGGCGCCGC CGCCGGGGCG
ATCGCCGGCG GCTGGATGGC CGACCGGATC GGCCGGATCC GCGCCATGCA GATCGCGGCG
GTCCTGTTCA TCATCAGCGG CATCGGCAGC ATGTTCGCCT TCCAGCCCTG GGACCTGACG
ATCTGGCGCA TCCTCGGCGG CTTCGCTATC GGCATCGCCT CGGTGATCGG CCCGGCCTAC
ATCGCCGAGG TCTCCCCGCC GGCCTTCCGC GGCCGGCTGA CCTCCTTCCA GCAGCTGGCG
ATCGTGCTGG GCATCGCGAT CTCCGCGCTC GTCAACTATC TGATCAACCA GTGGGCCGGC
GGCACCAACA CTGACCACCT CGGCGGGCTG GCCGCCTGGC GCTGGATGCT CGGCGCCGAG
GTGATCCCGG CGATCTTGTA CGGCGTGCTG AGCACGATGA TCCCGGAGTC GCCGCGCTTC
CTGGTCGCGA ACGGCGAGGA CGACCGGGCC CGCGAGGTGC TCGCCGAGGT CGAGGGCACA
CACGCGAACG TCGCCGACCG CATCGCCGAG ATCCGCGATC AGCTGGCCGG GGAGGTCAAA
CCGAAGCTGG CGGACCTGCT CACCCCGAGC CGGAAGAACC TGCTGGCGGT GGTCTGGATC
GGCATCGGAC TCTCGGTGCT GCAACAGTTC GTCGGCATCA ACGTGATCTT CTATTACAGC
TCCCTGCTGT GGCAGTCGGT CGGCATCGAC ACCTCCAACT CGCTGCTGAT CTCGATGATC
TCCGCGGCGG TGAACATCGC CGGCACCGTG GTGGCGATGG CGCTGGTGGA CCGGATCGGC
CGGCGTCCGC TGCTGCTGAT CGGCTCGGTG GGGATGGCGG TGACGCTGGG GCTGTGCGCC
TGGATGTTCT CCTACGGCAC GCACGCCAAC GGCAAGACCA CCCTGCCGAA GGCCCAGGGC
GTCACGGCGC TGCTCGGCGC GAACGCCTAC GTGTTCTTCT TCGCGATGTC CTGGGGCGTC
GTGGTCTGGG TGCTGCTCGG CGAGATGTTC CCGAACCGGA TCCGCGCCGT GGCGCTGTCG
GTCGCGGCCA GCGCGCAGTG GCTGGCGAAC TGGTTGGTGA CGGTCTCGTT CCCGTCGCTG
TCCCGCTGGA GCCTGGCCGG GGCGTACTCG CTCTACGCGA TCGCGGCGGC GGTCTCCATC
CCCTTCGTGT ACTACCTTGT CCGGGAAACG AAGGGAAAAA CCTTGGAATC GATGGGATAG
 
Protein sequence
MTTRTGRESG PNPPGDSAAA RVAPRIVFIA AAAALGGFLF GYDSAVINGA VTGIQHDFNV 
GSGTTGFVVA AALPGAAAGA IAGGWMADRI GRIRAMQIAA VLFIISGIGS MFAFQPWDLT
IWRILGGFAI GIASVIGPAY IAEVSPPAFR GRLTSFQQLA IVLGIAISAL VNYLINQWAG
GTNTDHLGGL AAWRWMLGAE VIPAILYGVL STMIPESPRF LVANGEDDRA REVLAEVEGT
HANVADRIAE IRDQLAGEVK PKLADLLTPS RKNLLAVVWI GIGLSVLQQF VGINVIFYYS
SLLWQSVGID TSNSLLISMI SAAVNIAGTV VAMALVDRIG RRPLLLIGSV GMAVTLGLCA
WMFSYGTHAN GKTTLPKAQG VTALLGANAY VFFFAMSWGV VVWVLLGEMF PNRIRAVALS
VAASAQWLAN WLVTVSFPSL SRWSLAGAYS LYAIAAAVSI PFVYYLVRET KGKTLESMG