| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0161 |
|---|
| Symbol | |
|---|
| ID | 8331486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 171991 |
|---|
| End bp | 172635 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644953328 |
|---|
| Product | ThiJ/PfpI domain protein |
|---|
| Protein accession | YP_003110957 |
|---|
| Protein GI | 256389393 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0374821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCA TCGCCATCCC GCTGTTCCCC GGCTTCATGC CCCTGGACGT CGTCGGCCCG
TACGACGTCC TCCGCTTCCT GCCAGACCAC GAGGTCGTCT TCGTCGCATC CGACCCCGGC
GTGATCAACG GCGCCGACGG CGGCTTCGGC CTCCAGGCCC AAGCCACCCC CGCCGACATC
GACACCTGCG ACATCCTCCT GGTCCCCGGC GGCCGAGGCA CCCGCGACCA CGCAGCCCGC
AAGGACCTGA CCGACTGGAT CGCCCGCATC CACCAAACCA CCACCTGGAC CACCTCGGTC
TGCACCGGCT CCCTCCTCCT CGGCGCAGCC GGAATCCTCA CCGACACCGA CGCCACCACC
CACTGGAACG CCATCCCCGC CCTCGAATCC TTCGGCGCCC ACTACACCCC CGAACGCGTA
GTCCGCCGCG GCAAGGTGGT CACCGCAGCA GGAGTTTCTT CCGGCATCGA TATGGCACTC
ACCCTCGCGG GACTGATCGA AGGCGACGAA TTCGCCCAAG CAGTCCAACT CTGGATCGAG
TACGACCCGC AGCCCCCGCA CGACACCGGC TCGGTCGCCA AAGCCGGCGC CGACCTGACC
GCGCGGACGC CGGGGCTGAT CGGGGGCGGC GGGCGGCGGG GATGA
|
|---|
| Protein sequence | MPRIAIPLFP GFMPLDVVGP YDVLRFLPDH EVVFVASDPG VINGADGGFG LQAQATPADI
DTCDILLVPG GRGTRDHAAR KDLTDWIARI HQTTTWTTSV CTGSLLLGAA GILTDTDATT
HWNAIPALES FGAHYTPERV VRRGKVVTAA GVSSGIDMAL TLAGLIEGDE FAQAVQLWIE
YDPQPPHDTG SVAKAGADLT ARTPGLIGGG GRRG
|
|---|
| |