| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0052 |
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| Symbol | |
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| ID | 8331377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 51292 |
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| End bp | 52770 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644953219 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003110848 |
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| Protein GI | 256389284 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.309192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGC TCTCGTCGTC GCCGATGTCC ATGCCCTCTC CCATGTCGTC GCCCTCCCCG
ATGTCGTCGC CCTCCCCGCT GTCTCCGGTC CCGCTGCCGG GAGCGGAGCG GCTGCGGCTC
AACGCAGCAC TCGTGGATCG GGTCCGGACC CGGCTGGCGA CCCCGCCGGT CCGGGTCGAC
ATGCAGGCGA TCCTCGCCGC GCTGCGGGCC GAGGGCTGCA TGCTCGACGG CCGCGATCTG
CGCGCTGCGG CGTACCAGGT CCGCTCCGAA CTCACCGGCG CCGGCGTGCT GGACCGCTAT
CTGGCCGATC CGGAGGTCAC CGACGTCCTG GTCAACGCGC CGGACTCGGT GTGGATCGAA
CGCGCCGGGA CGTTGAGCCG CGCCGACGTG CGCTTTCCGG ACGAGGCGGC GGTGCGGCGG
CTCGCGCAGC GGCTGGCCGC CCACGCCGGA CGCCGGCTCG ACGACGCGGC GCCGTGCGTC
GACGGGATCC TGCCCGACGG CGCGCGGCTG CACGCGGTGC TGCCTCCGAT CGCCGCGCGG
GGAACGCTGA TCTCCCTGCG CGTCCCACCA CGGCGGGCGT TCACCGTGGA CCAGCTCACC
GCCGGCGGAC TGACCACCGA GCACGGCGCG CGCCTGCTGC GAGCCGTCGC CTCAGAGAAG
GTGTCCTATC TGGTCACCGG CGGGACCGGC AGCGGCAAGA CGACGCTGCT CGGCGCGCTG
CTCGGTCTGG TGCCGGGCGA CGAGCGGATC GTCATCACCG AGGAATGCAC CGAGGTGGTC
GTCGACCATC CCCATGTGGC GCGGCTGCAA TGCCGGATCG CCAATCAGGA GAACCGCGGC
GCGGTGAACC TGCGGACGCT GGTACGGCAG GCGCTGCGGA TGCGGCCGGA CCGGGTGGTG
GTCGGCGAGG TGCGCGGGCC CGAGGTGTTG GAACTCCTGG CAGCTATGAA CACCGGGCAC
GACGGATGCG CGGCGACGAT GCACGCCAAC GGGGTCGAGG ACGTCGTGGC CCGCGTCGAA
GCCCTCGCCG CCCCGGCCGG GATGGAGCGC AGCGCGCTGC ATGCACAGCT GAACTCCGCG
GTGCAGGTGG TCGTCCATCT GGTGCGAGAT AAGGGGAAAC GGCGGCTCGC CTCGATCGGC
GTCATCGACC GCGGGTTCGG GGAGACCGAG GTCCTGCCCG CCGTGGACTT CGATGACACG
GGCAAGGCGA CCTATGGTCC CGGTTCGGAC CGTCTCAGCT TCCTGTTGGG CTTCGAGGTC
CGGGAGAGCA CCGACGAAGC CCCGAAAGCG AAGCCGCCGC CGCCTCGGCT TCCCGTCGAC
GATCTGGAGA AGTTGGCTGG TTGGGAGGAA GCGCTGGCCG TCGCCGATCG TCTGCTGCCG
GTCCTCAAGA ACGCGGCAAA CGGTGGCGAC AGTCACGTCG ACGAGCCCTT CGTCGCGGAC
TACGGCCCTT CACCAACGCG TCGAGGAGGC CACCGATGA
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| Protein sequence | MNALSSSPMS MPSPMSSPSP MSSPSPLSPV PLPGAERLRL NAALVDRVRT RLATPPVRVD
MQAILAALRA EGCMLDGRDL RAAAYQVRSE LTGAGVLDRY LADPEVTDVL VNAPDSVWIE
RAGTLSRADV RFPDEAAVRR LAQRLAAHAG RRLDDAAPCV DGILPDGARL HAVLPPIAAR
GTLISLRVPP RRAFTVDQLT AGGLTTEHGA RLLRAVASEK VSYLVTGGTG SGKTTLLGAL
LGLVPGDERI VITEECTEVV VDHPHVARLQ CRIANQENRG AVNLRTLVRQ ALRMRPDRVV
VGEVRGPEVL ELLAAMNTGH DGCAATMHAN GVEDVVARVE ALAAPAGMER SALHAQLNSA
VQVVVHLVRD KGKRRLASIG VIDRGFGETE VLPAVDFDDT GKATYGPGSD RLSFLLGFEV
RESTDEAPKA KPPPPRLPVD DLEKLAGWEE ALAVADRLLP VLKNAANGGD SHVDEPFVAD
YGPSPTRRGG HR
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