Gene Afer_1818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1818 
Symbol 
ID8323912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp1903551 
End bp1904180 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content66% 
IMG OID644952949 
ProductSNARE associated Golgi protein 
Protein accessionYP_003110405 
Protein GI256372581 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.685944 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCGGTAT TCATTCGGCT TTTGCTGTCG GTTCCGACAT GGCTGGTCTT GGTCCTGGTC 
TTTGGCTTTC CAGCTCTCGA GTCGTCGATC TTTCTCGGGT TCATCTTCCC TGGCGAGACG 
TCGGTGGTGC TCGGCGGGGT GCTCGCTGCG GAGCACCGGT TCCCGGTGTG GGAGTCAGGA 
TCACTGGCTG CGCTGGGGGC CATCGTCGGT GACTCGGTCG GGTTCTGGGT GGGGCGCCGT 
TTCGGCGAGC CGCTCCTTGC CAAGGTCCCG GAGCGCCTGC TCTCGAAGCG ACAACGTGAC 
CGAGCGGTTG GATTCGTCCA ACGCAGGGGA GCACTCGGCG TCGTCGTCGG TCGCTTCACG 
ACCGTCCTTC GTGTGCTGGT GCCGGGCATC GCGGGCATGG CCGAGATGCC CTATCGTCGT 
CGCTTTCTGC CGGCCAACGT GGTAGGTGGC GTCGGGTGGG CAGCGCTCTA CACGGGTCTC 
GGTTACGTGG CTGGAAGGAA CTACAGCTCG GTCCTCACCT CGGCAAGCCT GACCAGTACG 
GCTGTGCTGG CGGCGATCGT GGTGGTGGCG CTCGGACTCT GGTTGTGGCA CCACGTCATC 
ACGCCGCGGC GCGACCGCGC CGCCGGTTGA
 
Protein sequence
MAVFIRLLLS VPTWLVLVLV FGFPALESSI FLGFIFPGET SVVLGGVLAA EHRFPVWESG 
SLAALGAIVG DSVGFWVGRR FGEPLLAKVP ERLLSKRQRD RAVGFVQRRG ALGVVVGRFT 
TVLRVLVPGI AGMAEMPYRR RFLPANVVGG VGWAALYTGL GYVAGRNYSS VLTSASLTST 
AVLAAIVVVA LGLWLWHHVI TPRRDRAAG