| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1741 |
|---|
| Symbol | |
|---|
| ID | 8323832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 1827371 |
|---|
| End bp | 1828129 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644952872 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003110330 |
|---|
| Protein GI | 256372506 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTCAACG CCAACGGTCT TCCCCAACAG CTCCTCGTCG TGGGGGGTGG GTCCGATCTC
GCGGTCGCGA TCATCGAGCG CCTCGCAACC GACGGCCCCC TCGAACGCGT CGCGCTCGCC
GGACCGCGGC CGGCCACACT CGAACGCGCT CGCGACCGGA TCCGTGAGCA CCTCGACGAG
GTCGCCACGT TCCACCTGGA CCTCGCCGAT CCACGAGCGG TACCGAGCGA CCTCGAACCA
GCCCTCGAGT GGCTCGGCAG TGTGGATGCC GTCCTCGTCG CGGCAGGTGT CCTCCCCGAC
CAACACGCTG CCGAGGCCGA CCCCGCCATC GTCGCGAATG CCTTTGCGGT CAACGCCACC
GGACCTGCGG TGGCACTCAG CGTGCTCGCC GATCGCCTCG AGCGGGCCGG CACCGGTCAG
CTGATCGTCC TCTCGTCGGT CGCCGCCACG GTGGTGCGCC GGCGAAGCTA CGTCTACGAC
GCGTCGAAGG CGGCGCTCGA TCGCTTTGCC CTCGGGCTCG CCGATCGCCT CGAACCGGCG
GTCGGTGTCC ACATCGTGCG CCCGATGTTC GTCACGACCC GCATGACCGA GGGTCTCGAG
CGACCACCGC TCGCGCTCTC GCCCGAACAG GTCGCTCGCG CAACCATCGC AGGGATCCAG
GCTCGCCAAC GAGTGATCTG GGTGCCCCGG GCCGCCGCGC TCGGGGTCAT GGTGCTCAGC
GTCCTGCCGC GCACCGTCCT CCGACGTCTC CCGATCTGA
|
|---|
| Protein sequence | MLNANGLPQQ LLVVGGGSDL AVAIIERLAT DGPLERVALA GPRPATLERA RDRIREHLDE
VATFHLDLAD PRAVPSDLEP ALEWLGSVDA VLVAAGVLPD QHAAEADPAI VANAFAVNAT
GPAVALSVLA DRLERAGTGQ LIVLSSVAAT VVRRRSYVYD ASKAALDRFA LGLADRLEPA
VGVHIVRPMF VTTRMTEGLE RPPLALSPEQ VARATIAGIQ ARQRVIWVPR AAALGVMVLS
VLPRTVLRRL PI
|
|---|
| |