| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1640 |
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| Symbol | |
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| ID | 8323731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1731735 |
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| End bp | 1733147 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644952771 |
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| Product | glutamate decarboxylase |
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| Protein accession | YP_003110229 |
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| Protein GI | 256372405 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | [TIGR01788] glutamate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGGT TGGCTCGACG GCACTCGTCA CCACGGCGAC ACACGTTCTC GAAGGACCTC
CCGATCAATC CGCTCTTCGT CCGCGAGCTC ACCGAGGGTG TACCACGTGC ACGGCTGCGG
AGCGATGGTC TCGGTCCCGA CCTCGCTTAC CAGGTGATTC ACGACGAGAT CGCGATGGAT
GGCAACGCGC GCCTCAACCT TGCGACCTTC GTGACCACGT GGATGGAGCC GCAAGCCGAT
CGTCTCTATG CCGAGGCGGT CGACAAGAAC ATGATCGACA AGGACGAGTA CCCGCAGACG
GCAGCGATCG AGGGTCGCTG TGTTCGGATG CTCGCCGATC TGTGGCATGC GCCCGATCCC
GACACCACGA TCGGTGTCTC CACCACGGGT TCGTCAGAGG CGTGCATGCT CGCAGGCCTC
GCGCTCAAGC GGCGTTGGCA GATCGCCCGT CGCGCCACGG GGGCGCCGAC GGATCGGCCG
AACATCGTCG TGAGCTCCGC CGTGCAGGTG GTGTGGGAGA AGTTCGCTAA CTACTTCGAG
GTCGAGCCTC GTTACGTTCC GGTCACGCCC GAGCACCCGA CGCTGGACGC CGACGGGGTA
CTCGCGGCGG TGGACGAGCG CACGATCGGT GTCGTGCCGA TCCTTGGCGT GACGTACACG
GGGGTCTACG AGCCGGTCGC CGAGATCGCG CGTGCCCTCG ACGAGCTCTA CGAGCGTACG
GGTCTCGACA TCCCGATCCA CGTCGACGGC GCCTCGGGCG GGTTTGTCGC GCCGTTCCTC
GAGCCACAGC TCGACTGGGA CTTCCGCCTA CCGCGAGTCG TCTCGATCAA CGCATCGGGC
CACAAGTTCG GGCTCGTCTA TCCCGGACTC GGCTGGGTCG TATGGCGCCA AGCGACGGAC
GTTCCCGAAG AGCTGATCTT TCGTGTCGCC TATCTCGGCG GTGACATGCC GACGCTGGCG
CTGAACTTCT CTCGCCCGGG GGCGCAGGTG CTCCTGCAGT ACTACACCTT CTTGCGACTG
GGCCGCGAGG GCTTCACCGC CGTGCACGCG AGTGCCCAAC GAGTCGCTCG CATGATCGCC
GACGAGCTGG CATCGCTCGG ACCGTTCGAG GTGATCGGCG ACGGGCGTGA CATCCCTGTC
GTGGCGTGGC GTCTGCGGCC AGGTGAGGTG CGACCGTGGG ACCTCAATCA CCTCTCACAC
GAGCTGCGCG CTTATGGGTG GCAGGTGCCG GCCTATCCCA TGCCTGATGC GATGAGCGAC
GTCACGGTGA TGCGCGCCGT GGTGCGCAGC GAGTTCTCCG CGGACATGGC AACGCTGTTC
CTCGATGACC TCGCCGAGTG TGTCGAGGTG CTCGAGCGCC ACGGGACCCC GCCGCCAGTG
CATCCGACCG TGCGGGAGTC CTTCCACCAC TGA
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| Protein sequence | MIRLARRHSS PRRHTFSKDL PINPLFVREL TEGVPRARLR SDGLGPDLAY QVIHDEIAMD
GNARLNLATF VTTWMEPQAD RLYAEAVDKN MIDKDEYPQT AAIEGRCVRM LADLWHAPDP
DTTIGVSTTG SSEACMLAGL ALKRRWQIAR RATGAPTDRP NIVVSSAVQV VWEKFANYFE
VEPRYVPVTP EHPTLDADGV LAAVDERTIG VVPILGVTYT GVYEPVAEIA RALDELYERT
GLDIPIHVDG ASGGFVAPFL EPQLDWDFRL PRVVSINASG HKFGLVYPGL GWVVWRQATD
VPEELIFRVA YLGGDMPTLA LNFSRPGAQV LLQYYTFLRL GREGFTAVHA SAQRVARMIA
DELASLGPFE VIGDGRDIPV VAWRLRPGEV RPWDLNHLSH ELRAYGWQVP AYPMPDAMSD
VTVMRAVVRS EFSADMATLF LDDLAECVEV LERHGTPPPV HPTVRESFHH
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