| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1554 |
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| Symbol | |
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| ID | 8323644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 1634259 |
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| End bp | 1636253 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644952690 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_003110149 |
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| Protein GI | 256372325 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.344764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAGT CGGCCGCTGC CCGCGTTGCC GCGCTGCGCT CGCTCATCCA GCGAGCGAGC
GAGGCGTACT ACGTCGCTGA TGATCCGATC ATGAGCGACG ATGAGTTTGA CGGGCTGGTC
CTCGAGCTGC GGGCGTTGGA AGCGGCCCAC CCCGAACTCC GTTCTCCGGA CTCGCCCACC
GAGAGGGTAG GCGCGCCTCC CGGATCGAGC TTCGCTCCAG TGCGCCATCG AACGCCGATG
CTCTCGCTGG ACAACGTCTT CGACGCCGAC GAGCTCGACG CCTGGGTCGA GCGGACGCGG
CGCGGTCTTG GCCACGACCC TGCGCTCTTC TTCGAGCTCA AGATCGACGG CCTTGCGCTC
TCGCTGACCT ATGTAGATGG CCGTCTGGCC CAAGCTGCCA CTCGCGGCGA CGGCGAGGTG
GGCGAGGACG TGACGGCGAA CGCCCTCGTC GTCGACGCGA TCCCACGTCG TCTCAAGGGC
GTCACGGGAC CTGGGCTCGT CGAGGTGCGC GGCGAACTCT TCCTGCCCCG CTCGGCCTTT
CGGGCCCTGA ACGAGCGCGT GGAGCGACCG TTCGCCAATC CTCGCAACGC CGCTGCCGGG
AGCCTTCGCC AGAAGGATCC GGCGCTCACC CGCGACCGCG GGCTCTCCTT CTTCGCCTAC
CAGCTCGAAG AGGGGCCGAG CTTCGACTAC CACCACGAAG CGCTCCAGTG GCTCGGCGAG
GTTGGTTTTC AGGTCGAAGC ACACGCCACC CCGGTCGGCC TCGACGAGCT CGCCGACAAG
CTCGCGTGGC TCGCCGAGGC TCGTGACGGG CTCGACTACG ACATCGACGG TGCGGTCATC
AAGGTCGACC GCCTCGAGGA TCGCGTGCGT CTCGGCACGA CGACGCACGC GCCACGGTGG
ATGATCGCCT ACAAGTTCCC CGCCGAGGAG CGTCCGACCC GGCTCGTGGG GATCGAGGTG
TCGGTGGGCA AGTCGGGCAA GGTGACGCCG TTCGCGGTGC TCGATCCGGT CCGGGTCGGC
GGCTCGACCG TCAGTCGCGC GACGCTGCAC AACGCAGACC AGATCGCACG GCTCGACGTT
CGTGTCGGCG ACACCGTGAT CGTTCGCCGA GCCGGTGAGG TGATTCCCGA GGTGGTTCGT
CCGGTACTCG AGCTGCGTCC CGACGACGCG GTGCCATGGG TCTTCCCCAC GACCTGCCCG
GTGTGTCATA CGCCCCTCGT GCGCGATCGC GGCGAGGTCG ACTGGCGCTG TCCCAACCGT
CGCTGTCCCG AGCAGCTCGT GCAGCGCCTC ATCCACTTCG CCAGTCGCGA CGCCATGGAT
ATCGATGGAT TGGGAGAACA ACGCGCGCGC CAGCTCGTCG AGGCAGGGCT CGTGGTCGTC
CCGCCGGATC TGTACCGACT CACGGACGAC GACCTGGCAC GGCTCCCTGG GGTGCGCCAC
CGGAGCATCG AGCGCCTCCG AGCTGGCATC GAGGCGTCGC GGTCGCGCCC GCTCGGGCGT
GTCATCTTCG CCCTCGCCAT CGACAACGTC GGTCAGCACG TCGGCATGCT CGTGGCTGAC
GTCGTCGGCT CACTCAGTGG CCTTCGAACC GTGACAGAGG ACGAGCTCTG TCGCGTCGAG
GGGATCGGCC CGGTCGTTGC GGCGAGCGTC GTCGCGTTTC GAGACAGCGA CCTCGGGCGC
GAGATCCTCG ACAAGCTCGA ACGTGCTGGG GTCGGAGCCT CAGCCGATCG CCCGCGCGCG
GCCGGTGGAC CCCTGGAGGG CCTCAGCTTC GTGCTGACGG GCACCGTGCC GGGCATTGGC
CGTGCGGAGC TCGCTGCGCT CATCGAGGAG CACGGCGGCC AGGTGCGTAC GTCGGTGAGC
CAGCGGACGA GCTACGTGGT GGCGGGGGCA TCACCGGGGT CGAAGCTCGA CGAGGCCCGC
GCTCGGGGGA TCCCCGTCAT CGACCTCGAT GGGCTCCGAG AGCTCATCGA CCGTCGAGGC
GGGTCGGATG CGTGA
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| Protein sequence | MTESAAARVA ALRSLIQRAS EAYYVADDPI MSDDEFDGLV LELRALEAAH PELRSPDSPT
ERVGAPPGSS FAPVRHRTPM LSLDNVFDAD ELDAWVERTR RGLGHDPALF FELKIDGLAL
SLTYVDGRLA QAATRGDGEV GEDVTANALV VDAIPRRLKG VTGPGLVEVR GELFLPRSAF
RALNERVERP FANPRNAAAG SLRQKDPALT RDRGLSFFAY QLEEGPSFDY HHEALQWLGE
VGFQVEAHAT PVGLDELADK LAWLAEARDG LDYDIDGAVI KVDRLEDRVR LGTTTHAPRW
MIAYKFPAEE RPTRLVGIEV SVGKSGKVTP FAVLDPVRVG GSTVSRATLH NADQIARLDV
RVGDTVIVRR AGEVIPEVVR PVLELRPDDA VPWVFPTTCP VCHTPLVRDR GEVDWRCPNR
RCPEQLVQRL IHFASRDAMD IDGLGEQRAR QLVEAGLVVV PPDLYRLTDD DLARLPGVRH
RSIERLRAGI EASRSRPLGR VIFALAIDNV GQHVGMLVAD VVGSLSGLRT VTEDELCRVE
GIGPVVAASV VAFRDSDLGR EILDKLERAG VGASADRPRA AGGPLEGLSF VLTGTVPGIG
RAELAALIEE HGGQVRTSVS QRTSYVVAGA SPGSKLDEAR ARGIPVIDLD GLRELIDRRG
GSDA
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