Gene Afer_1229 details

Gene Information

• Locus tag: Afer_1229
• ID: 8323303
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: -
• Start bp: 1285393
• End bp: 1287264
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644952359
• Product: threonyl-tRNA synthetase
• Protein accession: YP_003109833
• Protein GI: 256372009
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0441] Threonyl-tRNA synthetase
• TIGRFAM ID: [TIGR00418] threonyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCCGGT TCGTCGACCC CACTCGACCG GTCGCGGCGC GCTCGGACGA CGGCGAGCTC 
GTTGATCTCG ATCGAGCCGG TCCGGGTGCG ACCCTTGTGG CTGCCTCGAC ACCCGAGGGT 
CGCCAGGTGC TTCGTCACTC GGGTGCGCAC GTGGTCGCCA AGGCCATCTC GCGCCTCTGG 
CCGGGTACGC ACCTTGCCGT CGGACCGGCG ACGGAGGAGG GGTTCTTCTA CGACGTCGAG 
CTCCCCGGGG GACGCAGTCT CGACGACGAC GATCTCGCCG CGATCGCCGC CGAGGTCGAA 
CGCATCGTCG CGGCCGACGA ACCCTTCGAG CGCATCGAGC TCGAGCTCGA CGAGGCTCGG 
CGCCAGCTCG CCGACCAACC GTTCAAGCTC GAGATCCTCG ACCGCATCGC CGCTGGCGAG 
GCTGAGACGG ATGCCGCTTC GGGCTCTGCG GTCTCGATCT ATCGCACGGG TGCTGACTTC 
ATCGACCTGT GTCGAGGGCC ACACGTGCCC TCTACCGGCC ATCTCTCGGC CCTCCGCCTG 
CTCAGGGTCT CTGGCGCGTA CTGGCGCGGC GACGAGCACG GCCCACGGCT CCAGCGCGTC 
GCGGGGACGG CGTTCGAGTC CCCGGAGGCG CTCGAGGCGT GGCTGACGCA GATCGCCGAG 
GCCGAGCGGC GCGACCATCG TCGGCTCGGT CAGGAGCAGC GGCTCTTCTT CTTCCCTCGT 
GAGATCGGCG GCGGTCTCCC CGTGTTCGAG CCCGACGGGG CTTGGGTCCG TTACCGTCTC 
GAGGAGTTCT CCCGTCGCAT CCACTTTGCC GCCGGCTACG TCCCGGTGTG GACGCCGCAC 
GTCACGCGCG GCGCCTTGTT CGAGCTCTCT GGCCACCTGG GCTGGTACCG CGAGTCGATG 
TACCCGGCGA TGGAGCTCGA CGACGAGGAG TACTTCCTCA AGCCGATGAG CTGCCCCATG 
CACATCCTCG CCTACCGGCA GCATCCCCGT AGCTACCGAG AACTGCCGCT GCGGCTGTTC 
GAGCTGGCCA CGGTGTATCG CTACGAGCGT TCGGGTACCT TGCACGGATT GGCGCGGGTG 
CGCTCGCTCA CGCAGGACGA CGCCCACATC TTCTGCCGCG GCGATCAGTT GGCAGACGAA 
CTCACCGGGG TGCTCGACCT CGCGATGCGC CTGCTCGGCG CCTTTGGGCT GAACGACTTC 
GAGGCCGAGC TGTCGACGCG GCCCGCCAAG TCCGTGGGCA GCGACGAGGA CTGGGAGTTC 
GCGACGTCGG CCGCCCGGAG CGCGCTGGAG CGGTCGGGGC TCACCTATCG GGTCGCCGAG 
GGCGAGGGTG CGTTCTACGC GCCCAAGATC GACATCCACC TGCGTGATGC GATCGGCCGG 
CGCTGGCAGC TCTCGACGGT GCAGGTCGAT CTGCAGTTGC CGCAGCGCTT CGACCTCGGC 
TACCAGGGCG CTGACAACCG GATGGAGCGT CCGTTCATGA TTCATCGGGC GCTCTTCGGG 
TCCGTCGAAC GCTTCCTCGC CATCCTCATC GAGCACTTCG ATGGTGAGCT GCCGCCGTGG 
CTCGTGCGTG AACCGGTCCG CATTTTGCCG GTGGCTCATG AGGCGGCCGG CTGGGCCGAG 
GAGGTTCGTG CTGCGCTCGT TGCTGCGGGC GTCGGGGCTC AGGTGGTCGC GGCCGACGAA 
CCGCTCGGGG CACGGGTGCG ACGTGCTCGG ACCGAGCGAG TCCCCTACAT CGTGGTCGTG 
GGCAACGATG ACGTCGCTGC GCATTCGGTC GGGCTGACGC GCCCCGATCG GTCGCAGGCC 
CGCGGCGTCG CGCTCGAGAC GGCGATCGAC GAGATCGCAC GAGCGGTCGC CATGGCGGAG 
GTGCGTCCGT GA 

 

Protein sequence

MSRFVDPTRP VAARSDDGEL VDLDRAGPGA TLVAASTPEG RQVLRHSGAH VVAKAISRLW 
PGTHLAVGPA TEEGFFYDVE LPGGRSLDDD DLAAIAAEVE RIVAADEPFE RIELELDEAR 
RQLADQPFKL EILDRIAAGE AETDAASGSA VSIYRTGADF IDLCRGPHVP STGHLSALRL 
LRVSGAYWRG DEHGPRLQRV AGTAFESPEA LEAWLTQIAE AERRDHRRLG QEQRLFFFPR 
EIGGGLPVFE PDGAWVRYRL EEFSRRIHFA AGYVPVWTPH VTRGALFELS GHLGWYRESM 
YPAMELDDEE YFLKPMSCPM HILAYRQHPR SYRELPLRLF ELATVYRYER SGTLHGLARV 
RSLTQDDAHI FCRGDQLADE LTGVLDLAMR LLGAFGLNDF EAELSTRPAK SVGSDEDWEF 
ATSAARSALE RSGLTYRVAE GEGAFYAPKI DIHLRDAIGR RWQLSTVQVD LQLPQRFDLG 
YQGADNRMER PFMIHRALFG SVERFLAILI EHFDGELPPW LVREPVRILP VAHEAAGWAE 
EVRAALVAAG VGAQVVAADE PLGARVRRAR TERVPYIVVV GNDDVAAHSV GLTRPDRSQA 
RGVALETAID EIARAVAMAE VRP