Gene Afer_1221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1221 
Symbol 
ID8323295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp1276796 
End bp1277683 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content67% 
IMG OID644952351 
Productpyridoxal biosynthesis lyase PdxS 
Protein accessionYP_003109825 
Protein GI256372001 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0214] Pyridoxine biosynthesis enzyme 
TIGRFAM ID[TIGR00343] pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.329295 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCAGT ACGAAGTCGG CACGGCACGA GTCAAGCGGG GACTCGCCGA GATGCTCAAG 
GGCGGCGTCA TCATGGACGT GGTCAACGCG GAGCAGGCGA AGATCGCCGA GGATGCGGGT
GCGGTCGCGG TCATGGCGCT CGAGCGCGTT CCTGCGGATA TCCGTCGTGA TGGCGGCGTC
GCACGCATGA GCGACCCCGC CCTGATCGAG CAGATCAAGG ACGCCGTGAC TATCCCGGTG
ATGGCCAAGG TTCGCATCGG GCACTTTGCC GAGGCTCAGC TGCTCGAGGC TCTCGAGGTC
GACTACATCG ACGAGAGTGA GGTGCTCACG CCAGCCGATG AGGAGTTCCA CGTCGACAAG
TGGGCCTTCG AGGTCCCGTT CGTCTGTGGC GCGACCAACC TCGGGGAGGC GCTGCGTCGT
ATCGCTGAGG GTGCGGCGAT GATCCGGTCG AAGGGTGAGG CGGGTACCGG CAACGTCGTG
GAGGCGGTCC GACACCTGCG CTCCATCACG CGGGACCTGC GAGCCATCGC CCAGGCGCGC
CCGGAGGAGC TCTTTGGATG GGCCAAGCGA CTCGGCGCTC CCTACGAACT CGTCGCTGAG
GTCCATGCGC TCGGAGGCAA GCTCCCTGTG CCGCTGTTCT GCGCGGGAGG TATTGCGACC
CCAGCCGACG CGGCGCTCAC GATGCAGCTC GGCGCCGAGG CGAACTTCGT GGGCTCGGGC
ATCTTCAAGA GCGGTGATCC CGCCAAGCGG GCACGTGCCA TCGTGGAGGC GACCACGCAC
TACAACGAGC CCGACGTGGT GCTCGCGGTG TCGCGCAACC TCGGTGAGCC GATGGTCGGC
CTCGGTCTCG ATCAGATCGA CGAGCGACTC GCCGAGCGCG GTTGGTGA
 
Protein sequence
MTQYEVGTAR VKRGLAEMLK GGVIMDVVNA EQAKIAEDAG AVAVMALERV PADIRRDGGV 
ARMSDPALIE QIKDAVTIPV MAKVRIGHFA EAQLLEALEV DYIDESEVLT PADEEFHVDK
WAFEVPFVCG ATNLGEALRR IAEGAAMIRS KGEAGTGNVV EAVRHLRSIT RDLRAIAQAR
PEELFGWAKR LGAPYELVAE VHALGGKLPV PLFCAGGIAT PADAALTMQL GAEANFVGSG
IFKSGDPAKR ARAIVEATTH YNEPDVVLAV SRNLGEPMVG LGLDQIDERL AERGW