| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1036 |
|---|
| Symbol | |
|---|
| ID | 8323100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1071821 |
|---|
| End bp | 1073839 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644952163 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003109647 |
|---|
| Protein GI | 256371823 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA CCACGCTCTC GCCGTCGTCG ACGGTACGCG CCCACGGCGC TCGCCTTGGG
CTGATTCTCA CTGGCCTCTT GCTCGGGATG CTGGTGGCAG CCCTCGATCA GACCATCGTC
GCCACCGCAC TCCCGACCAT CGCCAACGAC CTGCATGGCT TCAGCCACCT GAGCTGGGTG
GTCACGGCAT ACCTCATCGC CTCGACCGCC TCGACGCCGC TGTGGGGCAA GCTCGGCGAC
CTCTACGGAC GCAAGCGCTT CTTCCAGCTC GCGATCCTCA TCTTCCTCGT CGGTTCGGCG
CTCTCCGGCC TGTCGCAGAA CATGCTGGAG CTGATTCTGT TCCGCGGTCT CCAGGGACTC
GGTGGCGGTG GCCTCATCGT GGGCGCGCAA GCGATCATCG GCGACGTGGT GTCACCGCGC
GATCGGGGCA AGTACCAGGG GCTCTTCGGC GCGATCTTCG GGGTCGCGAG CGTCGTCGGA
CCGTTGCTCG GTGGCTTCTT CGTCGACTCG CTCTCGTGGC GCTGGGTGTT CTACATCAAC
CTGCCCATCG GCATCATCGC GATCGCGGTG ATCTCGAGCG CCCTGCCCCA GCTCTCCACG
CGCGTCCAGC ATCGCGTCGA CTACCTCGGC ACGCTGCTCG TGGCCCTCGC CGCGACCGGC
TACATCCTCG TCACGACCCT CGGTGGGTTG ACGTACCCAT GGGGTTCGTG GCAGATCATC
ACCCTCACGA TCGCATCCAC CGTCGCCCTG GTCGCCTTCG TCCTCGTCGA GCAGCGCGCC
TCCGAGCCCA TCTTGCGCAT GGGCCTCTTC CGCAACCGCA CCTTCTCGAT GACGAGTGCG
ATCGGGTTCG TGGTCGGCTT TGCGATGTTC GGCGCAATCA CCTTCCTCCC CACCTTCTTG
CAGATCGTTC GCGGTGCCTC CCCCACGGTC AGCGGGATCC AGCTGCTGCC GCTCATGGCC
GGCCTGCTCG TCATGAGCAT CGGGGCAGGC CTGCTCATCA GTCGATTCGG GCGCTACAAG
GTCTTCCCGA TCGTCGGCAC GGCCCTCATG ACGGTCGGAC TGTGGCTGCT GAGCCGCCTC
AGCGTGCACA CGTCCTACGG CGTCATCGCC TTCGACATGA TCGTGCTCGG GGTGGGGATC
GGCGGCGTGA TGCAGGTGCT CGTCATCGCG GTGCAGAACG CGGTGGGCTA CGAAGACCTC
GGCGTCGCAA CCTCTGGGGC GACGTTCTTC CGCTCCATCG GCGCCTCGTT CGGCGTGGCG
ATCTTCGGCT CGATCTTCAC CAATGCGCTC GACTCCAAGC TCGCTGCCGT CGCCACCCGC
TACCACCTCC CGGCCAACCT GGCGGTTCAG GCCGAGGAGA GCCCGAAGGC ACTCACCGCC
ATCCCGGCCC AGATCCTGCC CCAGCTCCTG CACGCGTTCG CAAGCTCCCT GGACCGAGTC
TTCCTCGTCG CAGCGCCGAT CGGCCTCTTG GCCTTCGTGC TCACGCTCTT CCTGCCCGAG
CTGCGCCTGC GCCGCTCCGT CGCGGCCGCG GACCTCGGTG AGGGATTCGC CATGCCCGAA
GCCGATCCCG CCAAGGACGC CATCAGCCGC GTCCTCGAAC GGCTCTCACG CGACGGCGGT
GTCGAGCGGC TGTATCGACG ACTCGCACAA GACGCCGGAC TCGGCACGAC TCCGGCGGCG
ACCTGGCTGC TCTTCCGGGC GCGCGATGGG CGGCTGCCAC AGAGCACGCT CACGATGGCG
ACGCGAGCCG GCTGGGATCT GTCCGACGCG CTCGCTCGAC TCCGCGACGC TGGCCTCGTG
CGCACCGACG CGGACGTCAT CGAGCTCACC GAGGCGGGGC GAACCGCTCG GGCCGCACTC
GACGATGCGC GCCGTGCGGT CATCGCGGAG ACGCTCGGTG AGGGCGCAAC CTCCGAGACC
GCGGCAAGCC TCGTCGAGGC CATCGCGGAC ACGCTCGGGG TCCTCGATCC CGACGACGAT
CTCTTCTCCG AGGCTCGCGG GTCCGCTCGC TCCGCCTGA
|
|---|
| Protein sequence | MTDTTLSPSS TVRAHGARLG LILTGLLLGM LVAALDQTIV ATALPTIAND LHGFSHLSWV
VTAYLIASTA STPLWGKLGD LYGRKRFFQL AILIFLVGSA LSGLSQNMLE LILFRGLQGL
GGGGLIVGAQ AIIGDVVSPR DRGKYQGLFG AIFGVASVVG PLLGGFFVDS LSWRWVFYIN
LPIGIIAIAV ISSALPQLST RVQHRVDYLG TLLVALAATG YILVTTLGGL TYPWGSWQII
TLTIASTVAL VAFVLVEQRA SEPILRMGLF RNRTFSMTSA IGFVVGFAMF GAITFLPTFL
QIVRGASPTV SGIQLLPLMA GLLVMSIGAG LLISRFGRYK VFPIVGTALM TVGLWLLSRL
SVHTSYGVIA FDMIVLGVGI GGVMQVLVIA VQNAVGYEDL GVATSGATFF RSIGASFGVA
IFGSIFTNAL DSKLAAVATR YHLPANLAVQ AEESPKALTA IPAQILPQLL HAFASSLDRV
FLVAAPIGLL AFVLTLFLPE LRLRRSVAAA DLGEGFAMPE ADPAKDAISR VLERLSRDGG
VERLYRRLAQ DAGLGTTPAA TWLLFRARDG RLPQSTLTMA TRAGWDLSDA LARLRDAGLV
RTDADVIELT EAGRTARAAL DDARRAVIAE TLGEGATSET AASLVEAIAD TLGVLDPDDD
LFSEARGSAR SA
|
|---|
| |