| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1025 |
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| Symbol | |
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| ID | 8323089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 1053128 |
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| End bp | 1057123 |
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| Gene Length | 3996 bp |
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| Protein Length | 1331 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644952152 |
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| Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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| Protein accession | YP_003109636 |
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| Protein GI | 256371812 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR01443] intein C-terminal splicing region
[TIGR01445] intein N-terminal splicing region
[TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.400039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCAAGGT CCACGAGTGC ACGGATTCAG CGGCATTTCA CGGCTCCGGG GCTGCACCCG
TACGAGACGG TGGGATGGGA GCGTCGCGAC GCGCGGATCA CGAACTGGCG TACCGGCGAC
GTCGCCTTTG AGCAACGAGA CGTCGAGGTT CCCGTGACGT GGAGCCAGAA CGCCACGAAC
ATTCTCGCGC AGAAGTACTT CCGGGGCCAT CTCGGCACAC CGGAGCGGGA GGGCTCGTTG
CGCCAGGTCG TCGATCGGAT CGTGAATCGG ATCGTGGCCT GGGGCGAGGC CGATGGCTAC
TTCGCCGACG ACGACGAGCG CGATGCCTTC GCGGACGAGT TGCGCTGGCT GCTCGTCCAT
CAGCGAGCGG CGTTCAACTC GCCGGTCTGG TTCAACATCG GGGTCGAGGG CGTGCCGCAG
CAGGCGAGCG CCTGTTTCAT CCTCTCCGTC GATGACACGA TGGAGTCCAT CTTGAACTGG
TACCACGAGG AAGGGATCAT CTTCAAGGGT GGTTCTGGTG CCGGGGTGAA CCTCTCCACC
ATCCGCTCCT CGGTCGAGCC GTTGGCAGGT GGTGGCACCG CTTCGGGGCC GGTGAGCTTC
ATGCGAGGCG CCGATGCCTC AGCGGGCACC ATCAAGTCGG GAGGCAAGAC GCGGCGGGCT
GCCAAGATGG TCATCTTGAA CGTCGACCAC CCCGACGTCG AGGAGTTCGT CTGGACGAAG
GCCATCGAGG AACGCAAGGC GCGCGTGCTC GCAGAAGCCG GCTTCGACAT GGGCGTCGAC
GGCAAGGATG CGTTCTCGAT CCAGTACCAG AACGCCAACA ACTCCGTGCG CGTGACCGAT
GAGTTCATGC AGGCCGTCGT CGAAGACCGG GAGTGGGAAC TGCGGGCGGT GACGACGGGC
GAGGTCACCA AGACGGTGCG TGCCCGTGAC CTCTTCCATC AGATCGCCGA GGCCGCCTGG
GAGTGCGCTG ATCCAGGGCT CCAGTTCGAC ACCACCATCA ATCGCTGGCA TACCACGCCG
AATGCCGGGC GGATCAACGG GTCGAATCCG TGCTTCCCGG GCTCGGCCAG GGTCCACACC
AACAAAGGCC TCATCGCCTT CGAGGAGTTG ACCAGGCGCG TGCTCGATGG CGAGGAGTTC
CTGGTCTACA CGCACGACAG CACGAGCCCT GACGATCCTA CGGAGCAGGT GCTGCTCTCC
TCGCCAGAGG CGTTCATGGT CACCGGGTAC AACCAAGTCG TCAAGTTGCG CTTCGACAAC
GGCGCCGAAC TTCGCTGCAC ACCGGGACAC CGCATCTTCA CGGTCAATCG CGGTTACGTC
GCGGCCGAGG ACCTCACCCC GGAGGACGAG GTGCAGCTGC TGGATCTTCC GGCGCCAGCC
ACGGATGCAT CCTGGGTGTT GCCGGTGGCA ACCGATCCGG AGTTCTACCA TCACAAGGGC
GACCGCCGCG ACCCGATGAC CTTCCCAGAG CGCTGGAGCG AGGACTTCGC CCACTTCTTG
GGTTGGCTCA TCGGAGACGG GTCGCTCTCC AATGGGACGG TCGTGGCGAC CTATGGGTCT
CCAGACGACC AGCAGGAGAT CTTGCCGATC CACCAGCAAC TCCTGCTCGA GATCAACGGC
AACAGGCCTC TGAAGGTGTC GACCCAAGCC AACGGCACCG TCCAGCTGCG CTTTGGCAGG
CAACGGTTCA TGCGGTTCTT GGAAGCGCTC GGCATGAAGA GGGCGAAGGG ACCGGACAAG
GATGTGCCGT GGGCGATCGA GCAGGCTCCA GCGGAGATCG TCGGCGCCTT TCTTCGAGGC
TTGTTCGACG CCGATGGCAC GGTGATCGTC GACCGCAACA AGGGGTCCTA CGTTTCCCTT
GGCTCGATCT CGACGGGCTT GCTCCGCTCG GTGCAGCGAC TGCTGACGAC GTTCGGCATC
ACGAGCCGGA TCTACAAGAC GCGTTCGGGG TCGTCGAATG GGTCGTTCTC GTACACCGGG
CGTGATGGGG ACGTGAGGGT GTACCCGAAC CACGATGCTT ATCAGCTACG GATCACCTCG
GCGTCGATCG TGCGCTTCGC CGAGCACGTC GGGTTCGGCC TCGGCGCCAA GCAGGCGCGG
CTGCGCGACA TCGTGGGTGG ACAGCAGTCC TACGAGGTTC GGCGGACGGC GCGGCTGACG
GAGCGTCTCG AGGACGGGAT CGAGCTCACC TACAACCTGA GCGAGCCCAA GAACCATTCC
TACATCGTCG ATGGGATTGT GGTCCGGAAC TGCTCGGAGT ACATGCATCT CGACAACTCG
TCGTGCAATT TGGCTTCCAT CAACCTGCTT GCCTACCTGG ACGAGGACGG CAACTTCGAC
GTCGAGGGGT TCCGTCACAC GGCGCGAGTG CTCATCACGG CGCAAGACAT CCTCGCCGGC
AACGCCGACT ACCCGACACC GAGGATCGCG GAGACGTCGC GGGCCTATCG GCAACTCGGG
CTCGGCTATG CGAATCTCGG GGCGATGCTG ATGGCGCTCG GGCTCCCATA CGACTCAGAC
GGCGGGCGCG CCTATGCGGC TGCGGTGACG GCGCTCATGA CAGGAGCTGC GTACGAGCGT
TCTGCAGAGC TCGCCGAGCG CCTCGGCCCC TTCGCTGGAT ACGCCGACGA TGCTGAGTCC
ATGCTGCGGG TGCTCGGGAT GCATCGCGAC GCCTTGGCGA AGGTCGATGG CGCTCCGGAG
GCGATCGTCG AGGCCGCTCG TGCTTCGTGG GACATGGCCA TCGCGCGCGC GAGCGAGGTC
GGCGTCCGTA ATGCCCAGGC ATCGCTGCTC GCGCCGACCG GCACGATCGG GTTTCTCATG
GACTGTGACA CCACCGGTAT CGAGCCGGAC TTCTCACTGG TGAAGTACAA GACCCTCGTC
GGTGGCGGCA CCATGAAGAT CGTCAACCAG ACCGTGCCAC GGGCGTTGCG GACACTGGGG
TATCCGGAGC ACGAGATCGA CCAGATCACG GCCTATCTCG CCGAGCACGA CTCCATCGTC
GGTGCGCCTG GGCTCAAGCC GGAGCACGAA GCCGTCTTCG CATGCGCTGT CGGGGAATAC
CCGATCAGCC CGACGGGACA CCTCGCGATG ATGGGGGCCG TGCAGCCGTT CCTCTCTGGT
GCGATCTCGA AGACGGTGAA CCTGCCGAGC ACCTCCACCG TTGAGGACGT GGAGCAGACA
TACCTGGATG CCTGGCGGCT CGGGATCAAG GCGGTCGCGC TCTATCGCGA CGGATCGAAG
GTCGGTCAGC CCCTTTCGAC GACCCATGAG GAGGATTCTG AGGCCATCAC GTCGCTCAAG
GAACAGCTGA GCGAGCTCGA ACGCCAGCTC GCAGCCTCGC GGACGCGCCC CGTTCGGGAA
CGCTTGCCGC GACACCGGCG GAGCCGTACC TATGCGTTCC AGGTCGCTGA CGCCGAGGGC
TACGTGACGG TCGGGGAGTA TGACGACGGT CGTCCGGGCG AGGTGTTCGT CAAGGTCTCC
AAGCAAGGCT CGACGCTCGC TGGTGTGATG GACGCGTTCT CTATCGCAGT GTCGCTCGGG
CTCCAGCACG GCGTGCCTCT CGAGACGTTC GTGCGCAAGT ACGTCAACAT GCGCTTCGAA
CCGGCCGGCA TGACCGATGA CCCGGATGTG CGCATCGCCT CGAGCCTCGT CGACTACATC
TTCCGCCGGC TCGCCATCGA CTATCTGCCG CGAGAGGTGC GCGAGGACCT GGGGGTGCTG
ACGACGGCGG AGCGGCGAAC GGAGTTGCTG TTCCCAGTCG AGGAGGTCAG TGAGCCGACA
ACGCGTGCGA GTGCGCAGAC GTACTCTCAG GCTGAGCATC GCTTGGACTC GGGTCGGGAT
GACGTCGTGC ATGAGACTGC GACTCGTGAG AGCGGGCTGC ACGTCTCGGC GAGCGCGTCG
GACGCACCGT ACTGCTTCTC GTGTGGCAAC GTCATGCAGA GGTCTGGCTC GTGCTACGTC
TGTCCTGCGT GCGGGACGAC GAGCGGTTGT AGTTAG
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| Protein sequence | MARSTSARIQ RHFTAPGLHP YETVGWERRD ARITNWRTGD VAFEQRDVEV PVTWSQNATN
ILAQKYFRGH LGTPEREGSL RQVVDRIVNR IVAWGEADGY FADDDERDAF ADELRWLLVH
QRAAFNSPVW FNIGVEGVPQ QASACFILSV DDTMESILNW YHEEGIIFKG GSGAGVNLST
IRSSVEPLAG GGTASGPVSF MRGADASAGT IKSGGKTRRA AKMVILNVDH PDVEEFVWTK
AIEERKARVL AEAGFDMGVD GKDAFSIQYQ NANNSVRVTD EFMQAVVEDR EWELRAVTTG
EVTKTVRARD LFHQIAEAAW ECADPGLQFD TTINRWHTTP NAGRINGSNP CFPGSARVHT
NKGLIAFEEL TRRVLDGEEF LVYTHDSTSP DDPTEQVLLS SPEAFMVTGY NQVVKLRFDN
GAELRCTPGH RIFTVNRGYV AAEDLTPEDE VQLLDLPAPA TDASWVLPVA TDPEFYHHKG
DRRDPMTFPE RWSEDFAHFL GWLIGDGSLS NGTVVATYGS PDDQQEILPI HQQLLLEING
NRPLKVSTQA NGTVQLRFGR QRFMRFLEAL GMKRAKGPDK DVPWAIEQAP AEIVGAFLRG
LFDADGTVIV DRNKGSYVSL GSISTGLLRS VQRLLTTFGI TSRIYKTRSG SSNGSFSYTG
RDGDVRVYPN HDAYQLRITS ASIVRFAEHV GFGLGAKQAR LRDIVGGQQS YEVRRTARLT
ERLEDGIELT YNLSEPKNHS YIVDGIVVRN CSEYMHLDNS SCNLASINLL AYLDEDGNFD
VEGFRHTARV LITAQDILAG NADYPTPRIA ETSRAYRQLG LGYANLGAML MALGLPYDSD
GGRAYAAAVT ALMTGAAYER SAELAERLGP FAGYADDAES MLRVLGMHRD ALAKVDGAPE
AIVEAARASW DMAIARASEV GVRNAQASLL APTGTIGFLM DCDTTGIEPD FSLVKYKTLV
GGGTMKIVNQ TVPRALRTLG YPEHEIDQIT AYLAEHDSIV GAPGLKPEHE AVFACAVGEY
PISPTGHLAM MGAVQPFLSG AISKTVNLPS TSTVEDVEQT YLDAWRLGIK AVALYRDGSK
VGQPLSTTHE EDSEAITSLK EQLSELERQL AASRTRPVRE RLPRHRRSRT YAFQVADAEG
YVTVGEYDDG RPGEVFVKVS KQGSTLAGVM DAFSIAVSLG LQHGVPLETF VRKYVNMRFE
PAGMTDDPDV RIASSLVDYI FRRLAIDYLP REVREDLGVL TTAERRTELL FPVEEVSEPT
TRASAQTYSQ AEHRLDSGRD DVVHETATRE SGLHVSASAS DAPYCFSCGN VMQRSGSCYV
CPACGTTSGC S
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