| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0989 |
|---|
| Symbol | |
|---|
| ID | 8323053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1009361 |
|---|
| End bp | 1012129 |
|---|
| Gene Length | 2769 bp |
|---|
| Protein Length | 922 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644952117 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_003109601 |
|---|
| Protein GI | 256371777 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACA ATGATGGCGC ACTCATCGAA GGCCAGATTC CGATCCCGCC AGCCTTCTGG
CTTTGGGCCA AGACCTCGAG AGCACCCACG GAGCCTCCGA CCTACCGCTG GCACCCCCTC
GCGGCGCACC TCGTCGACGC CGCCCTCGTT GCACAGCAGC TGTGGGCCGG GTGGCTCTCA
CCATCGACGA AGCGCTGGCT CGGCGAACCC CTCGGCGGTG AGGACCACGC TCGAGCATTG
TTTGCCCTCC TCGCCGGGTG TCACGACCTC GGCAAGGCCA CACCCGCTTT CCAAATCCAG
GTCGACTGGC TGCACCCGCA ACTCCGCGAC GCCGGCCTCG CCGTGGACAA GCCGCTCCCC
CAGCGCTCGA AGGCACCTCA CGCACTCGCC TCGGCGGCCA CGGTGCAGCC GCTGCTCGCA
GCTCGCGGCT GGAGCGAACC CGCTATCCGC GGAGTTGCAG CGATCCTCGG TGGTCACCAC
GGTTGGTTCC CTCCTCTGGG CTATGAGCGA GAACCGATCA AGCGCCCCGA ACTCTATGGT
CTGGCGGGAC GACCTCTCGG CGGTGCCGGA GACCCCTGGA GTGCCGCGCG CGAGCGCCTG
TTCGACCTCG TCGTCGAGGT CGCCGGTGCG CAGCAGGTAC TCGGCCTCGC AGGCACAACC
GAACTCGGCA GTGCGCGGCG ACTCGCACTC GCAGGGTTCG TCATCCTCGC GGACTGGATC
GCGAGCAACG AGCAGCTCTT CCCCTACCTC TGCCTCCCCT ATGACGACGC CTACCTCCAC
GCAGCTCAGC AGCGCGCCGC CGAGGCGCTC GTGCAACTCG GATGGCACGG AGTCGCCAAC
CTCGGAGCCG TGGTCGGCGC GCCCGCCTTC GAGCATCGTT TCGGCTTCTC GCCGAACGCC
CTACAGCGCC AGACGCTCGA GGCCGTCGAG CAAGGCGACG GGGGCCTAGT TCTTATCGAG
GCGCCGATGG GCATGGGTAA GACCGAAGCC GCCCTCGCTG CGGCCGAGGT CTTGGCCACT
CGCCAAGGTC ACGGCGGAGC CTTCATCGGC CTGCCAACAC AAGCCACGAG CAACCAGATG
TTCCACCGCA CCAGGCGCTG GTTGGAGCAG CTTGGGCCCG GCACCTTTGT GCTCGAACTT
GCCCACGGCC GCGCACAGCA GGTGCCAGCG TTCCGTGACC TCCTTGAGAA CGGCGCTCCG
TCCGCGGTCG ATGTCGACGA AGGCGACATC GCACGCGTCA CGGCCGAAGC ATGGTTCACC
GGTCCCAAAC GCCGCCTGCT CGCCCCCTTC GTCGTGGGCA CGATCGATCA GATCCTGCTC
GGAACCGCCA AGGTCCGCCA CGTGGCCTTG CGACACGTCG GTCTCGCCGG AAAAGTGGTC
ATCCTCGACG AGGTCCATGC CTACGACGCC TACATGTCGG TCTTCCTCCG CCGTGTCCTC
GAGTGGCTCG GCGCGGAGCG GATTCCGGTG ATTCTCCTCT CCGCAACGCT CCCTCCTGCC
GTGCGCGCAC GTCTCATCGA GGCGTATGCG GGACACTCGA CACCACTCGG GCTCGTGGGC
TATCCCTCGA TCACAACTGT CTCGACCGAC GGCCACGTCA CCACGACTCC AGTTGCTACG
GACGCATCAT CGGTTACGGT GCGCCTCGAG CACCTTGACG AGGACCCTGA GGACGAATCC
TCGATGCCGC TACTGGAGAT GGTCGCCCAA ATGGCAGAGG CCGGGGCGAA CATCCTCGTC
ATCCGCAACA CCGTGGCAAG GGCGCAACGC ACCTACCGCG CCGTCGCTGA GCGGCGACCC
ATGGGCACAG TACACCTGCT GCACGCTCGA TTCACCACAG CTGATCGACT GAGGAAGGAG
TCCTGGCTCG CGGAGCACTT CGGCCGCGGT GGCACACGCC TCTCAGGGCA GGTTGTCGTT
GGCACACAGG TGCTCGAACA ATCGCTCGAC ATCGATTTCG ACGTACTCGC GACCGACCTC
GCGCCGGTCG ACCTCGTCCT CCAGCGAATC GGCAGGGTCC ATCGCCACCG CGGCACGCGA
CGCCCCGTCG GCTTCACAGA GCCTCGTGTC ATCGTGACAG GGTTCACGCG CTCGCCAACC
GGACCACCCG CGTTTCCTTC GGGCTCGGTG CGAGTGTACG GAGAGCACCT GTTGCTTCGA
ACGGCCGCCC TGCTGCTCGC TCGGGACTCG CTGACGCTCC CCGATGACGT CCCCTCCCTG
GTGGCGGCCG TCTATGGGGA CGACGACGTC ATCGCTCCAG CCTGGCATGA TCATGGCGCT
CGGGTCGCCG TCGAATGGCA ATCGGAGCAA CACGAACGAG AACGACGGGC GGAGCAGTTC
GTCATCTCGG ACCCGACGAG GGCGGGGTAT CTCCTGGAAC TTGAACGTAT CCGTCTTGGC
GACCCTGAAG ACGACGATGA TCCTCGTGTC CAAGCGGCGG TGCGCGACAG CGTCCCGAGC
ATCGAGGTTG CGATCGCGTG TGTCGGCCCC TCGCCGAACA TCGCGCGCTT CGGGACGACC
GAGGTCAGTC TCGAGCATCC TCCGACGCCC GATGACGTCG AGGCGGTCCT CGGCTCGGTG
GTCCGGCTGC CTAGTTACCT CACGGAAGCT GCAACCAGTC TCGCCGTGCC GGAGGGTTGG
CGTCGTCACC CCTGGCTACG GCGTCAGCGG GTGCTCGTGT TGGGACTTGA CGGTGAATGC
TCGCTCGGGT ATTATCGCAT TCGATATACT GACGTAGAGG GATTGGAGGT GGTGAGCGGT
GGAGCCTGA
|
|---|
| Protein sequence | MTHNDGALIE GQIPIPPAFW LWAKTSRAPT EPPTYRWHPL AAHLVDAALV AQQLWAGWLS
PSTKRWLGEP LGGEDHARAL FALLAGCHDL GKATPAFQIQ VDWLHPQLRD AGLAVDKPLP
QRSKAPHALA SAATVQPLLA ARGWSEPAIR GVAAILGGHH GWFPPLGYER EPIKRPELYG
LAGRPLGGAG DPWSAARERL FDLVVEVAGA QQVLGLAGTT ELGSARRLAL AGFVILADWI
ASNEQLFPYL CLPYDDAYLH AAQQRAAEAL VQLGWHGVAN LGAVVGAPAF EHRFGFSPNA
LQRQTLEAVE QGDGGLVLIE APMGMGKTEA ALAAAEVLAT RQGHGGAFIG LPTQATSNQM
FHRTRRWLEQ LGPGTFVLEL AHGRAQQVPA FRDLLENGAP SAVDVDEGDI ARVTAEAWFT
GPKRRLLAPF VVGTIDQILL GTAKVRHVAL RHVGLAGKVV ILDEVHAYDA YMSVFLRRVL
EWLGAERIPV ILLSATLPPA VRARLIEAYA GHSTPLGLVG YPSITTVSTD GHVTTTPVAT
DASSVTVRLE HLDEDPEDES SMPLLEMVAQ MAEAGANILV IRNTVARAQR TYRAVAERRP
MGTVHLLHAR FTTADRLRKE SWLAEHFGRG GTRLSGQVVV GTQVLEQSLD IDFDVLATDL
APVDLVLQRI GRVHRHRGTR RPVGFTEPRV IVTGFTRSPT GPPAFPSGSV RVYGEHLLLR
TAALLLARDS LTLPDDVPSL VAAVYGDDDV IAPAWHDHGA RVAVEWQSEQ HERERRAEQF
VISDPTRAGY LLELERIRLG DPEDDDDPRV QAAVRDSVPS IEVAIACVGP SPNIARFGTT
EVSLEHPPTP DDVEAVLGSV VRLPSYLTEA ATSLAVPEGW RRHPWLRRQR VLVLGLDGEC
SLGYYRIRYT DVEGLEVVSG GA
|
|---|
| |