Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_0989 |
Symbol | |
ID | 8323053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | - |
Start bp | 1009361 |
End bp | 1012129 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644952117 |
Product | CRISPR-associated helicase Cas3 |
Protein accession | YP_003109601 |
Protein GI | 256371777 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCACA ATGATGGCGC ACTCATCGAA GGCCAGATTC CGATCCCGCC AGCCTTCTGG CTTTGGGCCA AGACCTCGAG AGCACCCACG GAGCCTCCGA CCTACCGCTG GCACCCCCTC GCGGCGCACC TCGTCGACGC CGCCCTCGTT GCACAGCAGC TGTGGGCCGG GTGGCTCTCA CCATCGACGA AGCGCTGGCT CGGCGAACCC CTCGGCGGTG AGGACCACGC TCGAGCATTG TTTGCCCTCC TCGCCGGGTG TCACGACCTC GGCAAGGCCA CACCCGCTTT CCAAATCCAG GTCGACTGGC TGCACCCGCA ACTCCGCGAC GCCGGCCTCG CCGTGGACAA GCCGCTCCCC CAGCGCTCGA AGGCACCTCA CGCACTCGCC TCGGCGGCCA CGGTGCAGCC GCTGCTCGCA GCTCGCGGCT GGAGCGAACC CGCTATCCGC GGAGTTGCAG CGATCCTCGG TGGTCACCAC GGTTGGTTCC CTCCTCTGGG CTATGAGCGA GAACCGATCA AGCGCCCCGA ACTCTATGGT CTGGCGGGAC GACCTCTCGG CGGTGCCGGA GACCCCTGGA GTGCCGCGCG CGAGCGCCTG TTCGACCTCG TCGTCGAGGT CGCCGGTGCG CAGCAGGTAC TCGGCCTCGC AGGCACAACC GAACTCGGCA GTGCGCGGCG ACTCGCACTC GCAGGGTTCG TCATCCTCGC GGACTGGATC GCGAGCAACG AGCAGCTCTT CCCCTACCTC TGCCTCCCCT ATGACGACGC CTACCTCCAC GCAGCTCAGC AGCGCGCCGC CGAGGCGCTC GTGCAACTCG GATGGCACGG AGTCGCCAAC CTCGGAGCCG TGGTCGGCGC GCCCGCCTTC GAGCATCGTT TCGGCTTCTC GCCGAACGCC CTACAGCGCC AGACGCTCGA GGCCGTCGAG CAAGGCGACG GGGGCCTAGT TCTTATCGAG GCGCCGATGG GCATGGGTAA GACCGAAGCC GCCCTCGCTG CGGCCGAGGT CTTGGCCACT CGCCAAGGTC ACGGCGGAGC CTTCATCGGC CTGCCAACAC AAGCCACGAG CAACCAGATG TTCCACCGCA CCAGGCGCTG GTTGGAGCAG CTTGGGCCCG GCACCTTTGT GCTCGAACTT GCCCACGGCC GCGCACAGCA GGTGCCAGCG TTCCGTGACC TCCTTGAGAA CGGCGCTCCG TCCGCGGTCG ATGTCGACGA AGGCGACATC GCACGCGTCA CGGCCGAAGC ATGGTTCACC GGTCCCAAAC GCCGCCTGCT CGCCCCCTTC GTCGTGGGCA CGATCGATCA GATCCTGCTC GGAACCGCCA AGGTCCGCCA CGTGGCCTTG CGACACGTCG GTCTCGCCGG AAAAGTGGTC ATCCTCGACG AGGTCCATGC CTACGACGCC TACATGTCGG TCTTCCTCCG CCGTGTCCTC GAGTGGCTCG GCGCGGAGCG GATTCCGGTG ATTCTCCTCT CCGCAACGCT CCCTCCTGCC GTGCGCGCAC GTCTCATCGA GGCGTATGCG GGACACTCGA CACCACTCGG GCTCGTGGGC TATCCCTCGA TCACAACTGT CTCGACCGAC GGCCACGTCA CCACGACTCC AGTTGCTACG GACGCATCAT CGGTTACGGT GCGCCTCGAG CACCTTGACG AGGACCCTGA GGACGAATCC TCGATGCCGC TACTGGAGAT GGTCGCCCAA ATGGCAGAGG CCGGGGCGAA CATCCTCGTC ATCCGCAACA CCGTGGCAAG GGCGCAACGC ACCTACCGCG CCGTCGCTGA GCGGCGACCC ATGGGCACAG TACACCTGCT GCACGCTCGA TTCACCACAG CTGATCGACT GAGGAAGGAG TCCTGGCTCG CGGAGCACTT CGGCCGCGGT GGCACACGCC TCTCAGGGCA GGTTGTCGTT GGCACACAGG TGCTCGAACA ATCGCTCGAC ATCGATTTCG ACGTACTCGC GACCGACCTC GCGCCGGTCG ACCTCGTCCT CCAGCGAATC GGCAGGGTCC ATCGCCACCG CGGCACGCGA CGCCCCGTCG GCTTCACAGA GCCTCGTGTC ATCGTGACAG GGTTCACGCG CTCGCCAACC GGACCACCCG CGTTTCCTTC GGGCTCGGTG CGAGTGTACG GAGAGCACCT GTTGCTTCGA ACGGCCGCCC TGCTGCTCGC TCGGGACTCG CTGACGCTCC CCGATGACGT CCCCTCCCTG GTGGCGGCCG TCTATGGGGA CGACGACGTC ATCGCTCCAG CCTGGCATGA TCATGGCGCT CGGGTCGCCG TCGAATGGCA ATCGGAGCAA CACGAACGAG AACGACGGGC GGAGCAGTTC GTCATCTCGG ACCCGACGAG GGCGGGGTAT CTCCTGGAAC TTGAACGTAT CCGTCTTGGC GACCCTGAAG ACGACGATGA TCCTCGTGTC CAAGCGGCGG TGCGCGACAG CGTCCCGAGC ATCGAGGTTG CGATCGCGTG TGTCGGCCCC TCGCCGAACA TCGCGCGCTT CGGGACGACC GAGGTCAGTC TCGAGCATCC TCCGACGCCC GATGACGTCG AGGCGGTCCT CGGCTCGGTG GTCCGGCTGC CTAGTTACCT CACGGAAGCT GCAACCAGTC TCGCCGTGCC GGAGGGTTGG CGTCGTCACC CCTGGCTACG GCGTCAGCGG GTGCTCGTGT TGGGACTTGA CGGTGAATGC TCGCTCGGGT ATTATCGCAT TCGATATACT GACGTAGAGG GATTGGAGGT GGTGAGCGGT GGAGCCTGA
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Protein sequence | MTHNDGALIE GQIPIPPAFW LWAKTSRAPT EPPTYRWHPL AAHLVDAALV AQQLWAGWLS PSTKRWLGEP LGGEDHARAL FALLAGCHDL GKATPAFQIQ VDWLHPQLRD AGLAVDKPLP QRSKAPHALA SAATVQPLLA ARGWSEPAIR GVAAILGGHH GWFPPLGYER EPIKRPELYG LAGRPLGGAG DPWSAARERL FDLVVEVAGA QQVLGLAGTT ELGSARRLAL AGFVILADWI ASNEQLFPYL CLPYDDAYLH AAQQRAAEAL VQLGWHGVAN LGAVVGAPAF EHRFGFSPNA LQRQTLEAVE QGDGGLVLIE APMGMGKTEA ALAAAEVLAT RQGHGGAFIG LPTQATSNQM FHRTRRWLEQ LGPGTFVLEL AHGRAQQVPA FRDLLENGAP SAVDVDEGDI ARVTAEAWFT GPKRRLLAPF VVGTIDQILL GTAKVRHVAL RHVGLAGKVV ILDEVHAYDA YMSVFLRRVL EWLGAERIPV ILLSATLPPA VRARLIEAYA GHSTPLGLVG YPSITTVSTD GHVTTTPVAT DASSVTVRLE HLDEDPEDES SMPLLEMVAQ MAEAGANILV IRNTVARAQR TYRAVAERRP MGTVHLLHAR FTTADRLRKE SWLAEHFGRG GTRLSGQVVV GTQVLEQSLD IDFDVLATDL APVDLVLQRI GRVHRHRGTR RPVGFTEPRV IVTGFTRSPT GPPAFPSGSV RVYGEHLLLR TAALLLARDS LTLPDDVPSL VAAVYGDDDV IAPAWHDHGA RVAVEWQSEQ HERERRAEQF VISDPTRAGY LLELERIRLG DPEDDDDPRV QAAVRDSVPS IEVAIACVGP SPNIARFGTT EVSLEHPPTP DDVEAVLGSV VRLPSYLTEA ATSLAVPEGW RRHPWLRRQR VLVLGLDGEC SLGYYRIRYT DVEGLEVVSG GA
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