| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0900 |
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| Symbol | |
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| ID | 8322964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | - |
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| Start bp | 921821 |
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| End bp | 924094 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644952034 |
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| Product | Radical SAM domain protein |
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| Protein accession | YP_003109518 |
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| Protein GI | 256371694 |
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| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
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| TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily
[TIGR03550] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit
[TIGR03551] 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.180074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGG CGCTGCTCGA GTGGTCCACC AACCGACTGC TCGCCGAAGC TGCTCGTCGG
CGCGATCGAA CCTTCGGGCC GAGGATCACC TACTCCCCGA AGGTGTTCAT CCCGTTGACG
CGTCTGTGCC GCGATCGCTG CGACTACTGC ACCTTCGCCA CCGTGCCCGC CCGACTCGGA
TCTGCCTTCC TGAGCCTCGA CGAGGTCCGC GCGTTGGCTC GCAAGGGGGC GGCGGTGGGC
GCTGCGGAGG CGCTCTTCAC CCTTGGCGAG CGCCCTGAGC TCCGATGGTC CAGCGCACGC
GATGCACTGC GTTCGCTGGG CGCTGCAACC ACCCTGGACT ACCTCCGCAC CGCGGCTGAC
GTCGCGATCG CCGAGGGACT CCTCCCTCAC CTCAATCCCG GGACGCTCAC GCCCGAAGAG
GTCGCGTCGC TACGACCGCA CGCCGTCTCG ATGGGCACGA TGCTCGAGTC CATCCGACCG
GACCTCCCGG TCCACCGCAA CGCACCCGAC AAGGATCCGG ATCTGCGCCT CGCAACGGTA
CGTGCGATGG CACTCCAGCA CGTGCCGACG ACCAGCGGCA TCCTCGTGGG CATCGGTGAC
AGCGAAGCCG ATCGCCTCCG TGCACTCGAA GCCCTCGCCG CCATCGCCGA GGAGACCGGC
TTCCTCCAAG AGGTGATCGT CCAGAACTTC CTCCCAAAAC CTGGTACTCG ACTGCGGCAC
GCCCCGCCCG CCGATCACGA GGCCCATCTG CGTACCATCG CACTCGCGCG TCTCGTGCTC
CCACCGACCG TCCATGTTCA GGCACCCCCG AACCTCTCGG ACGACATCGA GGGGCTCCTC
TCGGCGGGCA TCGACGATCT CGGCGGCATC TCGCGGGTCA CCCCCGATCA CGTCAACCCC
GAACGCCCGT GGCCCGAGAT CGAGCTCCTC GAGCGTCGCC TCGCCGAGGC AGGCCGCGAC
CTCGTGCCGC GCCTCGCGCT CTACCCCGAG TACGCGCGAC GTGACGACGC CGTCGACGAC
GCGCTCCGAC CCGCAGTGCG CGCGTCCATG GATCGCGATG GCTTCGCACG CGAGCACCAG
TGGTTCTCCG GTCGACCAGG TCCCCTCCCC CCGCGCGTGG TGACCGTCAG CCGACGAGCT
CCGGCCGGTT GGTTCGACGA GCTCGAAGCG GCGTCACGAT CGGGAGAGGG TCCCTCGCTC
GAGCTGCTCG AGCACGCCCT CAGTGCGCGC GGAACCGACG CACAGGCGGT CATCGACCTC
GCCGATGCGC TGCGGCGCGA GACGAACGGC GACGTCGTCA CCTTCGTTCA GAACCGGAAC
ATCAACTACA CCAACCAGTG CACCTTCGGC TGCGGGTTCT GCGCCTTCTC GCGCGGCCCG
CGCTCCTTGG CGCTCCGTGG CGCACCCTAT CTCCTGTCGA TGGAGCAGAT CCTCGCCAAG
GTTGCCGAGG CAGCCGCCCG TGGTGCGACC GAGGTCTGCC TCCAGGGCGG TATCCATCCT
CGCTTCGACG GCGGCACGTA CCTCGACATC GCCGAAGCCA TCCACGAACG CTTCCCGGCC
ATGCACATCC ACGCGTTCTC GGCACTCGAG GTCTTCGAGG GGAGCCGACG ACTCGGCTGG
CCCCTCGACC GTTACCTCAG CGAGCTCGCC GCCCGCGGTG TGCGAAGCCT GCCCGGAACG
GCCGCCGAGA TCCTCGATGA CGAGGTACGT GCGGTGATCT GCCCCGAGAA GCTGACCACC
GACCAGTGGC TCGAGGTCCA CGAGACCGCA CACGCGGTCG GCTTGCGATC GAACGTGACG
ATCATGTTCG GGACGGTCGA GACGACCACG CACACCGCAC GGCACCTCAT GCGCACCCGG
GCGCTCGGTA CGCGCACACG AGGGTTTACC GAGTTCGTGC CTCTCCCCTT CGTCCACATG
GGCGCACCGA TCTTCCTCGC TGGCCGTGCC CGCCGGGGTC CGACGCTCCG AGAGGCCGTC
CTCCTCCACG CGGTGGGGCG CATCGCCTAC CACGGTGTTA TCGACAACGT CCAGGCCAGC
TGGGTGAAGA TGGGGCCTGC CGGAGCCGTG CTCCTCCTCG ACGCCGGCGC GAACGACCTC
GGCGGGACGC TCATGGAGGA GTCGATTTCG CACGCAGCCG GGGCGGCACA CGCGAGCGAG
CTCACCGTCG CCGAGCTTGG TGCGATCGCA GCGCAGCGAG GCCGCCACCT CGTCCAACGA
ACGACGTTCT ACGAGCACCT GATGGACGTC ACGATCGCGA GCACGCACTC ATGA
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| Protein sequence | MTKALLEWST NRLLAEAARR RDRTFGPRIT YSPKVFIPLT RLCRDRCDYC TFATVPARLG
SAFLSLDEVR ALARKGAAVG AAEALFTLGE RPELRWSSAR DALRSLGAAT TLDYLRTAAD
VAIAEGLLPH LNPGTLTPEE VASLRPHAVS MGTMLESIRP DLPVHRNAPD KDPDLRLATV
RAMALQHVPT TSGILVGIGD SEADRLRALE ALAAIAEETG FLQEVIVQNF LPKPGTRLRH
APPADHEAHL RTIALARLVL PPTVHVQAPP NLSDDIEGLL SAGIDDLGGI SRVTPDHVNP
ERPWPEIELL ERRLAEAGRD LVPRLALYPE YARRDDAVDD ALRPAVRASM DRDGFAREHQ
WFSGRPGPLP PRVVTVSRRA PAGWFDELEA ASRSGEGPSL ELLEHALSAR GTDAQAVIDL
ADALRRETNG DVVTFVQNRN INYTNQCTFG CGFCAFSRGP RSLALRGAPY LLSMEQILAK
VAEAAARGAT EVCLQGGIHP RFDGGTYLDI AEAIHERFPA MHIHAFSALE VFEGSRRLGW
PLDRYLSELA ARGVRSLPGT AAEILDDEVR AVICPEKLTT DQWLEVHETA HAVGLRSNVT
IMFGTVETTT HTARHLMRTR ALGTRTRGFT EFVPLPFVHM GAPIFLAGRA RRGPTLREAV
LLHAVGRIAY HGVIDNVQAS WVKMGPAGAV LLLDAGANDL GGTLMEESIS HAAGAAHASE
LTVAELGAIA AQRGRHLVQR TTFYEHLMDV TIASTHS
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