Gene Afer_0633 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_0633 
Symbol 
ID8322693 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand+ 
Start bp638754 
End bp639941 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content70% 
IMG OID644951772 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_003109260 
Protein GI256371436 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCGTC CTCAGATCGC CCTCGCCCCA CGACGGCCCA CCCGCCAGGT CATGGTTGGG 
TCGGTACCTG TCGGCGGAGG GGCGCCCATC TCGGTGCAGT CGATGACGAC CACCCAGACC 
GCCGACGTCG AGGGCACCCT GACGCAGATC TACGCCCTCG CCGCTGCTGG CGCAGACATC 
GTTCGGGTGA CGTGCAACAC CCGTGACGCA GCCGATGGGC TCGCGCGCAT CGTGCCCCGC 
TCGCCCGTGC CGATCGTCGC GGACATCCAC TTCCACGTGG AGATGGCCCT CGCGGCACTC 
GATGCAGGGG TGGCCGCCCT CAGGCTCAAC CCCGGCAACC TGCGCAAGCG CGAGGAGATC 
CAGCTGGTGG CGCGCGAGGC GAAGGATCGC GCCATCCCGA TCCGCATCGG CGTCAACGCC 
GGTTCGTTGC ACCCGGAGTT TGCGGAGCGC TTCGGGGGCG CAACTCCGGA GGCACTCGTG 
GAGAGCGCGC TCTACGAGCT CGCGCTCTTC GAGGAGGTCG GTTTCGACGA CGTCGCGTTC 
TCGGTGAAGG CCTCCAACGT GCCGCTGATG ATCGCGGCCT ATCGGCTGCT CGCCGAGCGT 
ACCGATCATC CCTTGCACCT TGGCGTGACC GAGGCCGGGC CGCCGCCGGC GGGGCTCGTG 
AAGGCCACCG CCGGCATCGC GACGCTGCTC GCCGAGGGCA TCGGTGACAC GATTCGCTAC 
TCGCTCACCG CTGACCCCGT CGAGGAGGCG CGGGCAGGAC GGCAGTTGCT CGAGGCACTC 
GGCCTGCGAG AACGCAAGAA CCTCGACCTC ATCGCGTGTC CGAGCTGCGG GCGCGCCCAG 
GTGGACGTGA TCGGGATCGC CAAGGACGCC CAGGCACGGC TCGAGGAGCT CGGCCTGCCG 
ATCCAGGTGG CCGTCATGGG TTGCGTGGTG AATGGTCCGG GAGAAGCCAG GGAGGCGGAT 
CTCGGTATTG CGGGCGGTCG GCACAAGGGA CATCTGTTCA TCCGTGGGCA GATCGTGCGG 
GTGGTCCCCG AGCAGGAGAT GGTTGACGCG CTCGTCGAGG AAGCCAAGCG ACTCGTTGCC 
GAGGGCGTCG AGGCACGGCT CGCGGCCGCA GCTCCCGGAG CGGCCGAGGA GGCAGCCCGC 
GATCGCATGG CCGAACTCGG TGGCGAGGAG GGCTCGGCCA AGCGCTAG
 
Protein sequence
MARPQIALAP RRPTRQVMVG SVPVGGGAPI SVQSMTTTQT ADVEGTLTQI YALAAAGADI 
VRVTCNTRDA ADGLARIVPR SPVPIVADIH FHVEMALAAL DAGVAALRLN PGNLRKREEI 
QLVAREAKDR AIPIRIGVNA GSLHPEFAER FGGATPEALV ESALYELALF EEVGFDDVAF 
SVKASNVPLM IAAYRLLAER TDHPLHLGVT EAGPPPAGLV KATAGIATLL AEGIGDTIRY 
SLTADPVEEA RAGRQLLEAL GLRERKNLDL IACPSCGRAQ VDVIGIAKDA QARLEELGLP 
IQVAVMGCVV NGPGEAREAD LGIAGGRHKG HLFIRGQIVR VVPEQEMVDA LVEEAKRLVA 
EGVEARLAAA APGAAEEAAR DRMAELGGEE GSAKR