| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0341 |
|---|
| Symbol | |
|---|
| ID | 8322396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 349948 |
|---|
| End bp | 351474 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644951489 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_003108982 |
|---|
| Protein GI | 256371158 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGTG CGGCGTCGTC GCCTGGTCCG CTGGACGACC CCGGCGACGA GGTGGGTTTG
ACGACTCTTG CTCCGGGCGT CGCGGTGCAT CCGGATCATG CGAGCCTCCT GCGCGAACTC
GATACGGCAC CGCTCGGTCT CGAGCACGTC GTCTCGTGGT GGATCGCCTC GGGCGGGACG
CTCGCCGATG GCTTGTCCGT GGCCATCATC GGCATGGCGC TGCCACTCGC CGAACATCAG
CTGCACCTCG GTACCGTAGA GGTCGCGCTG CTCGGAGCTG GCCTGGTCGC TGGCGCTGCG
GTGGGGGCGA GCGTCGGTGG ACATCTCGCC GATCGTGTGG GGCGAACCGC GGTGATGCTC
GCCGACATGC TGCTCCTCAT CGTGGCGGCC GTGGCGAGCT CGGTCGCGTG GAGCGCGCCG
TTGCTGGTCG TCGCTCAGTG TGGGGTCGGT ATCGCCGTGG GTATCGATTT TCCCGCCGGG
TCGAGCTACG TCGCAGAGAC GATGCCTCAG GCTTCGCGTG CGCACTTCCT GGTGGCGACG
ATCGCGAACC AGGCGGTCGG GATGGTGCTC GGTGCTGCAC TCGTCCTCGG ACTCGTCCAC
GAGGTGCAGA CCCCGAGCGT GTGGCGCTTC TTCTTCGGCG TCGAGGCGCT CGTGGCAGCC
TTCTTTCTGC TCGCGCGCCT GCACCTCGTC GAGAGCCCAC GCTGGCTGAT GGCCCGCGGT
CGCAACCGGG AGGCGTTGCG CGCGATGGAG GTCTTCGTGC CGAGTCGAGC ACGCGCGTTC
GAGGGGATCG CTGCGCGGCT CGGCGATCGG CCGCTGCACG TCGCACGGAT CCCGCACGAT
GACAAGGCGG CGCGGTTTCG CTCCATCTTC GCCCCCGCCT ATCGTCGTCG TACGCTCCTG
ACGACCGTGC CGTGGCTCTT GATGGACATC GCGACCTACG GTGTCGGACT CTTCACGCCG
GTCCTCCTCG ATACGCTGGG GGTGCGATCC CACTCGTCGA ACCTGCCAGC GCGCACGGCG
AGCCTCGCCC TCGGGACGGG CTTCGTCGAC CTCTTCCTCC TCGCGGGCTT TGCCGTGGGC
GTCGTCGTCG TCGCCCGCTT CGGGCGTCTT CGCATGCAGA TCCTCGGCTT CGTCGGGATG
GCGATCGGCA TGGGTGTGCT TCTGGCGAGC ACGCAGGTGA CGATCTCGGT TCTCCGGGTC
GCGTTCGTGC TCGTCGGTTT CGTGGCTTTC AACTTCCTCA TGAATGTGGG GCCGAACAGC
ACGACCTACG TCCTGCCCGC GGAACTGTTC CCGACGCAGC TGCGCAGCAC CGGGTCGGGC
TTCGCCGCGT CGATGGCCAA GGTCGGAGCG ACGATCGGCG TGTTCCTCGT CCCCGTCGTG
TCGGCTCATT GGGGGACCGC CGCGGTCGTC GGTGCGATGG TCGTCGTCAG CCTTCTCGGT
GCGACCACCA CGGTGCTCTG GCGAGTCGAC GATCGTGAGC AGACGCTCGA GGAGCATCAG
GCGTCAGAGC CCGTCGATAC GCTGTGA
|
|---|
| Protein sequence | MAGAASSPGP LDDPGDEVGL TTLAPGVAVH PDHASLLREL DTAPLGLEHV VSWWIASGGT
LADGLSVAII GMALPLAEHQ LHLGTVEVAL LGAGLVAGAA VGASVGGHLA DRVGRTAVML
ADMLLLIVAA VASSVAWSAP LLVVAQCGVG IAVGIDFPAG SSYVAETMPQ ASRAHFLVAT
IANQAVGMVL GAALVLGLVH EVQTPSVWRF FFGVEALVAA FFLLARLHLV ESPRWLMARG
RNREALRAME VFVPSRARAF EGIAARLGDR PLHVARIPHD DKAARFRSIF APAYRRRTLL
TTVPWLLMDI ATYGVGLFTP VLLDTLGVRS HSSNLPARTA SLALGTGFVD LFLLAGFAVG
VVVVARFGRL RMQILGFVGM AIGMGVLLAS TQVTISVLRV AFVLVGFVAF NFLMNVGPNS
TTYVLPAELF PTQLRSTGSG FAASMAKVGA TIGVFLVPVV SAHWGTAAVV GAMVVVSLLG
ATTTVLWRVD DREQTLEEHQ ASEPVDTL
|
|---|
| |