Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_0205 |
Symbol | |
ID | 8322258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | + |
Start bp | 209473 |
End bp | 210630 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644951352 |
Product | AAA ATPase |
Protein accession | YP_003108847 |
Protein GI | 256371023 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.519462 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGACCTAG GTTGGCAGGA CTCGACCCGT GCGCTCTCGG TGCTCGCGTT TGCGCCCACG CCTCCGCCGC AGCCGGCGCC GAGCACCGTC GTCGGGATCG CTGGCAGTGG CGGACTGTTT CGCTTCGACG CCTTCGACCT CTACACCCAT GGGTGGCTGA CGAATCCCAA TGTGCTGATC CTCGGCGACG TCGGCCGCGG CAAGAGTACG CTCGTGAAGC TGCTCCTCGT CCGGTCTGCG ATCGCGGCCT CCGGCAGCTT GCTGGTGCTC GATCCGAAGG GCGAATATGG CGCCGTCGCT CGCGCCGTCG GCGCGAGCGT CATGCGCCCG CGCGCGGACC ATGGCGGGAT CGATCCCCTC GCTGGCTCGC TCGATCAGCG AGAGCGGGCT CGCGCCCTCG GCAGCGTGCT CGAAGCGTTG TGTGAGCGTC CGCTCGACGA GCTCGAGCGG CGTGCGGTGT CGGCCGTGTG CGTGGGACCG CTCGCGGGGC TCGCCGACGC CGCTCGACGC CTCGCGGCGC TTGACGCAGA GGTGTTCGAT GCGCGACTTG CCAGTGCCGG TCTCGAACGG GCGGCGCGGC TGGCGCTGTG GCTCTCGCGC GTCGTCGACG GGGATCTCGC GGGGATCTGG GAGACGCGAG GTGGGGGGAG TGCGCTGGCT CCGCGGGTCG TCGTGGATCT CAGCGACGTC GGCGCCGAGC GTTGGGTTCG GATCGCGGTC GCAGCACTCC TCCGCATGCG GTTGGCGCAG CTTGGCAGCG GTGAGGTTGC AGGTGGGCTC GTGGTCGTCG ACGAGGCATG GACGCTCGCG AGCGAGACCA GTACGCGAAC GCTGCTCGTG CGAGCGCTCA AGCTGGCGCG CGCCTACGGC GTCAGTGTGG TCGCGGTGAC ACATCGCCTA GCCGACGTCG CCGGTGCGAT GGATCTCATC GGCGACGTCG GTACCGTCGT CGCCTTCGGA CAGTCGTCGT CTGCAGCCCA GGACCTCGTC ACTGAGCTCC ATCTCGACGA GCGCGTGCGC GAGCTGGTCG CCGGTCTCGG GCGCGGTGTC GCGCTGTGGC TCCTCGGGGG ACACAGCTGG CTGGTCCGGC ACGTCGTTCG GGAGGAGGAG GTCGCACTCG TCGACACCGA CGCGCGGATG CGGGCTCCAG CACCATGA
|
Protein sequence | MDLGWQDSTR ALSVLAFAPT PPPQPAPSTV VGIAGSGGLF RFDAFDLYTH GWLTNPNVLI LGDVGRGKST LVKLLLVRSA IAASGSLLVL DPKGEYGAVA RAVGASVMRP RADHGGIDPL AGSLDQRERA RALGSVLEAL CERPLDELER RAVSAVCVGP LAGLADAARR LAALDAEVFD ARLASAGLER AARLALWLSR VVDGDLAGIW ETRGGGSALA PRVVVDLSDV GAERWVRIAV AALLRMRLAQ LGSGEVAGGL VVVDEAWTLA SETSTRTLLV RALKLARAYG VSVVAVTHRL ADVAGAMDLI GDVGTVVAFG QSSSAAQDLV TELHLDERVR ELVAGLGRGV ALWLLGGHSW LVRHVVREEE VALVDTDARM RAPAP
|
| |