| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0089 |
|---|
| Symbol | |
|---|
| ID | 8322137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 92695 |
|---|
| End bp | 94176 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644951234 |
|---|
| Product | penicillin-binding protein transpeptidase |
|---|
| Protein accession | YP_003108733 |
|---|
| Protein GI | 256370909 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGGC GCATCGGGAT CGTCACGCTC GTACTGCTGC TCGCCTTTGC CTTGGTCTTC
GTGCAGCTCA ACAACCTCCA GGTGGTCCAG GCGTCCAAGC TCGCCGACGC GCCCGGTAAC
ACCGCGGGCA TGCAGCGCAT CTTCTCGGAG AACCGAGGGC CGATCCTCAC CGCCGATGGC
CAGGTCATGG CCGAGTCCGT GCCGCTTCCC GGTGGCAACA GCTACCAGCG CACCTACCCG
GCCGGATCAC TCTACGGCGA CATCACCGGC TACTTCTCGC TCATCTACGG CCTGTCAGGC
CTCGAGTACG AGCTCAACCG CTACCTCGTC CCGCACGTGG TGGTACCCGA CTCGATCTCG
CAGCTCCTCG GGTCGAGCGA GCAGACCGAC TCGGTCGTCA CCACCATCAA CTCGCGCCTC
CAGCGCACGG CGTACCAGGC GCTCGGGTCA CTCAAGGGAG CGGTCATCGC GCTCGATCCC
CGAACCGGTG CGATCCTCGC CCTTGCATCG AACCCCACCT ACGATCCTGC GCCGCTCGCG
GCACAGTCGA CGACGACCGA GATCGCGGCC TGGAAGGCCG ATCTCGCCAA TCCGGGTGAT
CCGCTCCTGG ATCGGGCGAT TTCGCGCGCC TATCCGCCTG GGTCCACCTT CAAGATGGTG
ACGACCTCGG CAATCTTCGA CCACGACCCG AAACTCGCCC TGATCAACTT CCCTGCAGTG
TCGCAGATCC CCTTGCCTGA GACCACGCAC GAACTCCACA ATTACGCCTA CGAGTCCTGT
GGCGGTACGC TCACCCAGAC GCTCCCTGTG TCGTGTGACA CCGCCTTTGC GCAGCTCGGC
CTCAAGCTCG GCGCGACCGC GCTCAGCGAG GAGGCCACGG CCTTCGGATT CAATCAGGTT
CCTCCGATCG ACCTGCCCGG AGCGGCTGCG TCGACCTTCC CACCTGCATC GTTCTTCAAG
CAGAATCTCC CCCAGCTCGC CTTCAGCGCG ATCGGCCAAG GCAACGTCAC CGCGACCCTC
TTGCAGATGG CGCTGGTCGG AGCCGGTATC GCCAACCACG GCGCCATCAT GACCCCGCAC
GTCCTCAACC GTGTCCTCAA TCCTCAAGAC GCGGTCGTCA CGGCCTACCA CCCGCACGTT
TGGAGGGTCG CCACCAGTCC GTCCACGGCC GCACAGGTCA CACAGCTGAT GATCGACGTC
GTCCGCTACG GGACGGCGGT CGGCATCCAG ATCCCAGGTG TCCAGATCGC TGCGAAGACC
GGTACGGCCC AGACCACGTT GACGAGTCAC TCCTCGGTCC TTGGTGCATC GGACAACTGG
ATGGTTGCCT TCGCTCCGGC CGAGAACCCG CGCGTCGTCG TCGCTGTCGT CGTACCCAAG
CAGCCTGGGC TGTCCGCGAA CCCGACGGGG GCTCAGTATG CGGGCCCGGT CGTCAAGGCG
ATGCTGGAAG CTGCGCTCGG TATCACGGGA GGGCAGGGAT GA
|
|---|
| Protein sequence | MRRRIGIVTL VLLLAFALVF VQLNNLQVVQ ASKLADAPGN TAGMQRIFSE NRGPILTADG
QVMAESVPLP GGNSYQRTYP AGSLYGDITG YFSLIYGLSG LEYELNRYLV PHVVVPDSIS
QLLGSSEQTD SVVTTINSRL QRTAYQALGS LKGAVIALDP RTGAILALAS NPTYDPAPLA
AQSTTTEIAA WKADLANPGD PLLDRAISRA YPPGSTFKMV TTSAIFDHDP KLALINFPAV
SQIPLPETTH ELHNYAYESC GGTLTQTLPV SCDTAFAQLG LKLGATALSE EATAFGFNQV
PPIDLPGAAA STFPPASFFK QNLPQLAFSA IGQGNVTATL LQMALVGAGI ANHGAIMTPH
VLNRVLNPQD AVVTAYHPHV WRVATSPSTA AQVTQLMIDV VRYGTAVGIQ IPGVQIAAKT
GTAQTTLTSH SSVLGASDNW MVAFAPAENP RVVVAVVVPK QPGLSANPTG AQYAGPVVKA
MLEAALGITG GQG
|
|---|
| |