Gene Afer_0072 details

Gene Information

• Locus tag: Afer_0072
• ID: 8322120
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 68987
• End bp: 72292
• Gene Length: 3306 bp
• Protein Length: 1101 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644951217
• Product: transcriptional activator domain protein
• Protein accession: YP_003108716
• Protein GI: 256370892
• COG category: [R] General function prediction only
• COG ID: [COG3899] Predicted ATPase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.713941
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCGTCAGC CCATGGGGGC GTACGGGCGC AGCGCAACAG GGCGACGGAC GGGTGGTCCG 
CGGGTGAAGG TGCGTGTCCT CGGACAGCCG CGCGTAGAGA CCAGTCTCGG ATCCATCGCG 
GTCGGAGGTC AGCGGGCCAA GTTCCTCGTC GGGCTCGCAG CCGCAGGAGG CGTCCTCAGC 
GTCGAGGAGG CCGCGACGCT TCTCTGGCCT TCCGTACGTC CACCGAGCTG GCGCGGCGCG 
CTGCGCGTCC TCGTCCATGA GCTTCGCGAC GCGTTCTCGC GAGTTGGCGC ACCACGGGGG 
CTCGTGCAGC GTTCCGGCCC CATCTTCGTG CTCGATACTG GCGATGGTGA GGTCGACGTC 
GACCTCTGGT TTGCGAGGGA CGCCGCGCGG GATGGACGTG CGGCCTGGGA GGCGGGCGAC 
TTCGTGACGG CACGCGCGCG AGCTGAGGAT GTCGAGTCGA TCCTCGCCGA GGGTGTGCTG 
CCTGGGCTCG ATGACGAGGC CGTCCGTGAC CTGCGCGGTG GCGTCACGGC GGAGCGCATA 
CGGAACCTCG AGGTGCTCGC ACGCAGCGCG GCAGCACTCG GCGACTGCTC GAGTGCCCTT 
GAGACTGTCG AGGGTGCGCT CGGCCTCGAC CCCACCAACC AGCCCCTGTG CCAAGTCGGG 
CTCATGGCCG CGGAGACATT GGGTGCAGTG GCTCGCGGGC TCGCGCTCTA CGCCCGTCTA 
CGCGCCGCCC TCGCATCGGG CCTCGGCGTT TCTCCGAGCC CCGCACTCGC CGCAAGCTAC 
GCGCGTCTCA TTGCTGCGCA AGGTGGGCAA GCGCGAGGCG CCGACGAGCC CCACTCCCTG 
CCCGAGGCCA TGAGGTCCCG TCACCGTGTC GTTGGTCGGA CGACCGAACT CGCTCACCTC 
GGCGTGTTGT GGGGCAGGGT CGAGCGCGGC GAGGGGCTCG CGTCCGTCGT GGTCGGTCCC 
GCAGGCATCG GCAAGACAGC CTTGCTCGGC GAGCTCGGTG CGGTCGTCGT GAGTCGAGGA 
GGCAGGGTGC TCTACGGGCG CGAGTCGGAT CCGCCTTCGC ATGAGCTCGC GGCGATCGTC 
GAGGCACTGC GCGCCTATCA GACTCGCTGT GCGCGGGTCG GCGTGCCTTG CAACCTCGGA 
CCGCTCGGAG CGGACCTCGA AACCCTGCTC GGAAGCGGCT CGGACAACGT TCGTCTCGCA 
CCGCGGAGCC GACGCCTTCG ACTCTCGCAG GCAGTTCGCG GATGGTGGGC GGCAGTCGGC 
TCTGAGCGCC CGACGCTGGT CGTCTTGGAC GATCTCCACT GGGCCTCGGC GACGACGACA 
GCCATCCTGG CCGATCTCGC CGTCGATGGC CCCCCTGAGG GTGTTCTCGT CGTTGGCGCC 
GCACGCTCGA CGGGATCGGC GCTGCCACCG AGCATCGGGT CATTGGTCTC GTGGGGCGCT 
CGGACCATCG AACTCGGACC ACTGGCGCTC GACGCCGTCG CCGACCTCCT CGGCTCGACC 
GGACATGACG CCGCACGAGT CGCTGCGGAA GTCTGGCTCG CGAGCGGGGG CAATCCCGAG 
AGAGTGTGGG AACTCGCTGA GCTCGTCGTG AATCCCGGAG CCCGAGGTCG CAGCGGTCTC 
GCGCGCCTCG ACGTCGATCG CCTCTCCCCA CCCGCACGAC GGATCGTCCG AGCTGCGGCC 
GTGCTCGGTC GCGCAACGCC CGCGTCCGTC GTGTTCGACG TTGCCGACAC TGACGATGTC 
GCCGCGCTGC AGGAGGCGCA GGCTGCGGGC GTCCTCGGCC TCTCGCAGGG GGGTTCCGTC 
GTGCTACGAC ACGACCTCCT CCGTGAGGAC GTCCTCGCGC AGGCAGGGAC CGATGAGAAG 
GTCCGCTTGC ACGCCCGAGC GGCCGAGGCG CTTGCCAAGG GAGGTACGTC GTCGCACACC 
CTCGTCCACC ACCTCGCTCG AGCGGCCCCC GTAGTGTCGC CCGAGCGACT CGCCAAGGCC 
CGTCTCTCGG CGGCGCGCGA AGCCGCCAGC CTCGGCGCGT ACGAGGATGC ACTCAGTGCA 
CTCGACGCTT GGCGGGTGGA GCGGTCGGAC GGTGGAGCCG ATGACCTGGA TGCCCTCGTG 
CTGCGAGTGG AGTGCTTGAG TGCCCTCGGC GATCCACGGC TCCGAGACGC CGTGGTCGAG 
CTCTTGGAGC GTGCCGTGGT TCTGCGTCGG ATCGCTGCGG CAGCGACGGC TGCCGAGATC 
GTCACCGCGG CGCTCATCCC GACCCTCGTG GGTCGAGAGG ATCCCGCCAT CACCACGCGG 
TTGCAGGCCG CTCTCGAGCG AGCCCGTCGA CCGGAGCACA TCGCCTCCTT GGCGTCTGCG 
CTTGCCCTGT CGCGGGTCTG GACGGCGTCG GCCAGGGATC GGCGAGCGCT GGCGAGGCGT 
GCGGTCGCGG CCCTCGACCG TCGCGGCGGC CAGGGTGCCG ACGCCCTCGC ACTGGCGACC 
TTGACGCGAG CGCACCTCGG CAGCCTCGAG GCAGCCCACC CAGCCCATCG CCTCGCCAGC 
GCTCGCCGCA TCCTCGCGCT TGCGAGGTCG ACTCATGACA TCGAGGGCGT TGCTCGCGGC 
CATCTACTGG CGCACGACGC GCTGGTGGAG CTCGGTCATC TCGACGAGGC CGACCTCGAA 
CTCCAGGCTG CCCGGCTGTG CGCCGCAGCT CTCGACGACC AGGTGCGCTG GGAGGTGGAG 
ATCCGTGAGG CAGGACGTCG GCTCATGGCG GGGAGGCTTC GCGATGCCGA GGCAGCCGCT 
GAGCAGGCGC TGGTCACGGT CCGGGCCGAG ATTCTCCGCG AAGGCGCTGC GGCGGTCTAC 
GGGGCCCAGC TGATGATGGT GCGCGAGGCC GAGGGACGGC TTGGCGAGCT CGCGGACGCC 
GTCGCAGAGT TTCGTCGGGT CCAGCACGAG TGGACGGTGT GGGACGCTGC CGAGGCGAGA 
ATCGCGGTCG CGCTCGGTGA TCAAGGCCGT GCGCGCGAGC TCCTCGCGCG CGGTGTCGCC 
GAGCTCGAGG ATCCTGTGCG CACCGACATC ACGTGGCTCG CGCGTGCCGT GCAGTACGCG 
TGGGTCGCTG GCGACGTCCG CGACGTCGAG ATGGCGCAGC GCTTGGTGGC ACTCCTTGCG 
CCCTACCGAG GGACGGTGCA CTGGTCGGTG TGCGTCAGCC TCGGTCCGGT CGACCTACTC 
CTCGCACGGC TGTTGATGCT GGCCGACCCG CGACGTGCCT CGACACCGCT CGAGCGTGCG 
CGTCGGCTCC TCGCCAACGA TGGGCTCGCA TACTGGCGCG CACGGCTTGC CGACCTGGTG 
AGCTGA 

 

Protein sequence

MRQPMGAYGR SATGRRTGGP RVKVRVLGQP RVETSLGSIA VGGQRAKFLV GLAAAGGVLS 
VEEAATLLWP SVRPPSWRGA LRVLVHELRD AFSRVGAPRG LVQRSGPIFV LDTGDGEVDV 
DLWFARDAAR DGRAAWEAGD FVTARARAED VESILAEGVL PGLDDEAVRD LRGGVTAERI 
RNLEVLARSA AALGDCSSAL ETVEGALGLD PTNQPLCQVG LMAAETLGAV ARGLALYARL 
RAALASGLGV SPSPALAASY ARLIAAQGGQ ARGADEPHSL PEAMRSRHRV VGRTTELAHL 
GVLWGRVERG EGLASVVVGP AGIGKTALLG ELGAVVVSRG GRVLYGRESD PPSHELAAIV 
EALRAYQTRC ARVGVPCNLG PLGADLETLL GSGSDNVRLA PRSRRLRLSQ AVRGWWAAVG 
SERPTLVVLD DLHWASATTT AILADLAVDG PPEGVLVVGA ARSTGSALPP SIGSLVSWGA 
RTIELGPLAL DAVADLLGST GHDAARVAAE VWLASGGNPE RVWELAELVV NPGARGRSGL 
ARLDVDRLSP PARRIVRAAA VLGRATPASV VFDVADTDDV AALQEAQAAG VLGLSQGGSV 
VLRHDLLRED VLAQAGTDEK VRLHARAAEA LAKGGTSSHT LVHHLARAAP VVSPERLAKA 
RLSAAREAAS LGAYEDALSA LDAWRVERSD GGADDLDALV LRVECLSALG DPRLRDAVVE 
LLERAVVLRR IAAAATAAEI VTAALIPTLV GREDPAITTR LQAALERARR PEHIASLASA 
LALSRVWTAS ARDRRALARR AVAALDRRGG QGADALALAT LTRAHLGSLE AAHPAHRLAS 
ARRILALARS THDIEGVARG HLLAHDALVE LGHLDEADLE LQAARLCAAA LDDQVRWEVE 
IREAGRRLMA GRLRDAEAAA EQALVTVRAE ILREGAAAVY GAQLMMVREA EGRLGELADA 
VAEFRRVQHE WTVWDAAEAR IAVALGDQGR ARELLARGVA ELEDPVRTDI TWLARAVQYA 
WVAGDVRDVE MAQRLVALLA PYRGTVHWSV CVSLGPVDLL LARLLMLADP RRASTPLERA 
RRLLANDGLA YWRARLADLV S